Parental gene:

Mcts1, ENSMUSG00000000355

Aliases:Mcts1, 1500019M23Rik, MCT-1
Description:malignant T cell amplified sequence 1 [Source:MGI Symbol;Acc:MGI:1916245]
Organism:Mouse (Mus musculus)
Coordinates:X:38600577..38613426(+)


>ENSMUSG00000000355
ATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACCTCGGTTATTAAGGGTATTAAAAA
TCAATTGCTAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGACCCTGTGAAAATTGTCC
GATGCCATGAACACATAGAAATCCTTACAGTAAATGGAGAATTACTGTTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACTTTAAGATTACTTCATAAATATCCTTTTATCTTGCCACATCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCTGGCTTAACTTCTCCCGGAGCTAAGCTTTATCCTGCTGCAGTAGATACTATTGTTGCAA
TCATGGCAGAAGGAAAACAACATGCTTTATGTGTGGGTGTCATGAAGATGTCTGCAGAAGATATTGAGAAAGTAAACAAA
GGAATTGGCATTGAAAATATCCATTATCTAAATGATGGTCTGTGGCATATGAAGACATATAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 27 .01 RPM
SRP007412_cerebellum 14 .46 RPM
SRP007412_heart 8 .44 RPM
SRP007412_kidney 14 .51 RPM
SRP007412_liver 14 .53 RPM
SRP007412_testis 1 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034992 ortholog_one2one 1 retrogene
retro_btau_116,
Canis familiaris ENSCAFG00000018545 ortholog_one2one 1 retrogene
retro_cfam_94,
Cavia porcellus ENSCPOG00000005502 ortholog_one2many 1 retrogene
retro_cpor_1411,
Equus caballus ENSECAG00000014597 possible_ortholog 1 retrogene
retro_ecab_697,
Erinaceus europaeus ENSEEUG00000007258 possible_ortholog 1 retrogene
retro_eeur_197,
Echinops telfairi ENSETEG00000015462 possible_ortholog 1 retrogene
retro_etel_19,
Felis catus ENSFCAG00000008448 possible_ortholog 2 retrogenes
retro_fcat_1009, retro_fcat_310,
Homo sapiens ENSG00000232119 possible_ortholog 1 retrogene
retro_hsap_2422,
Gorilla gorilla ENSGGOG00000009420 possible_ortholog 1 retrogene
retro_ggor_1507,
Macropus eugenii ENSMEUG00000014328 possible_ortholog 1 retrogene
retro_meug_1518,
Myotis lucifugus ENSMLUG00000015101 possible_ortholog 1 retrogene
retro_mluc_16,
Macaca mulatta ENSMMUG00000009043 ortholog_one2one 1 retrogene
retro_mmul_626,
Monodelphis domestica ENSMODG00000010354 ortholog_one2many 1 retrogene
retro_mdom_203,
Mustela putorius furo ENSMPUG00000001407 ortholog_one2one 1 retrogene
retro_mputfur_98,
Nomascus leucogenys ENSNLEG00000015021 ortholog_one2one 1 retrogene
retro_nleu_2442,
Oryctolagus cuniculus ENSOCUG00000014315 possible_ortholog 1 retrogene
retro_ocun_212,
Pongo abelii ENSPPYG00000020687 possible_ortholog 2 retrogenes
retro_pabe_1786, retro_pabe_1833,
Pan troglodytes ENSPTRG00000022241 possible_ortholog 1 retrogene
retro_ptro_1396,
Pteropus vampyrus ENSPVAG00000013249 possible_ortholog 3 retrogenes
retro_pvam_1323, retro_pvam_645, retro_pvam_867,
Rattus norvegicus ENSRNOG00000002563 possible_ortholog 2 retrogenes
retro_rnor_1841, retro_rnor_957,
Ictidomys tridecemlineatus ENSSTOG00000011496 ortholog_one2one 2 retrogenes
retro_itri_1136, retro_itri_1468,
Tupaia belangeri ENSTBEG00000010666 possible_ortholog 2 retrogenes
retro_tbel_1485, retro_tbel_4265,
Tarsius syrichta ENSTSYG00000001440 possible_ortholog 1 retrogene
retro_tsyr_55,
Tursiops truncatus ENSTTRG00000007208 possible_ortholog 1 retrogene
retro_ttru_1587,
Vicugna pacos ENSVPAG00000001801 ortholog_one2one 1 retrogene
retro_vpac_138,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_69 93.92 100.00
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2. retro_mmus_2504 65.96 51.93
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3. retro_mmus_2505 59.85 71.82
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Download FASTA sequences of all ENSMUSG00000000355 retrocopies