RetrogeneDB ID: retro_meug_1684

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold52931:19497..19833(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB25
• Ensembl ID: ENSMEUG00000016598
• Aliases: None
• Description: RAB25, member RAS oncogene family [Source:HGNC Symbol;Acc:18238]

Sequence

>retro_meug_1684
GTGGTGGAGTGCTGACAAAAGGAGCTATATGACCACACAGAGGCCACCATCATTATCATGTTAGTGGGCAATAAGAATGA
CCTGAGTCAGCCAAGAGAGGTGCTCACCAATGAATATCGAATGTTTGCTGAAAATAATGGACTCTTATTTATTGAAACCT
CTGCTCTTGACTCCACTAATGTTAAGATGACTTTTGAAACTGCCCTCAAAGAGATTTTCACCAAGGTGTTCCAACAGTGG
CAGAATAATGCCTGTGTCTATGCAGTCATTCCAGGAAGCATCCAACCTGGGCAAGAGCTGGGATCTGAGGAGAAGAATGC
TTGCTGTATCAACCTT

Alignment

ORF - retro_meug_1684 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.11 %
• Parental protein coverage: 52.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VVERWLKELYDHAEATIVVMLVGNKSDLSNAREVPTEEARMFAENNGLLFIETSALDSTNVELAFETVLK
          VVE...KELYDH.EATI..MLVGNK.DLS..REV.T.E.RMFAENNGLLFIETSALDSTNV...FET.LK
Retrocopy VVEC*QKELYDHTEATIIIMLVGNKNDLSQPREVLTNEYRMFAENNGLLFIETSALDSTNVKMTFETALK

Parental  EIFSKVSKQRQNNARASTVTLSSAQPGQELGSEEKKACCINL
          EIF.KV..Q.QNNA....V...S.QPGQELGSEEK.ACCINL
Retrocopy EIFTKVFQQWQNNACVYAVIPGSIQPGQELGSEEKNACCINL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1684 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1684 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007715	1 retrocopy	retro_cjac_1256,
Macropus eugenii	ENSMEUG00000010489	2 retrocopies	retro_meug_2160, retro_meug_91,
Macropus eugenii	ENSMEUG00000016598	2 retrocopies	retro_meug_1684 , retro_meug_770,
Monodelphis domestica	ENSMODG00000016955	1 retrocopy	retro_mdom_1710,