RetrogeneDB ID: | retro_meug_1837 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold64217:9273..9730(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSMEUG00000004597 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c [Source:HGNC Symbol;Acc:855] |
Percent Identity: | 66.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSESPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVM-RLLIMKSIIPVVMAGII-AIYGLVV |
MS..P.Y...FAVMG.SAA.VFSALGA.YGTAKSGT..AA.SV.....I.KSI.PVVM.G.I..IY.LVV | |
Retrocopy | MSDGPQYKPSFAVMGTSAARVFSALGAVYGTAKSGTRTAAKSVVPPWPITKSIVPVVMVGSI<PIYDLVV |
Parental | AVLIANSLTPGITLFKSFLQLGAGLSVGL-SGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEV |
AVLI.NS.T..I.L.K.FLQL.A.LSV.L.SG..AGFA...VG.A.V..TA.QP.RLF.G.ILILIFA.. | |
Retrocopy | AVLIINSVTDRISLCKGFLQLEADLSVDL>SGQEAGFAVDTVGYAWVPETAKQP>RLFLGTILILIFANE |
Parental | LGLYGLIVALILSTK |
LGLY.L.VALILSTK | |
Retrocopy | LGLYSLVVALILSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies |
retro_meug_1428, retro_meug_1837 ,
|
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |