RetrogeneDB ID: retro_meug_1847

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold65136:7998..8866(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEPT5
• Ensembl ID: ENSMEUG00000015556
• Aliases: None
• Description: septin 5 [Source:HGNC Symbol;Acc:9164]

Sequence

>retro_meug_1847
TACGTGGGATTTGCGAATCTCCCAAATCAAGTATACAGAAAATCTGTGAAGAGAGGATTTGAGTTCACGCTTATGGTAGT
AGGAGAATCTGGATTGGGGAAGTCGACGTTAATCAACTCATTATTCCTAACAGACTTGTATTCTTCAGAGTACCCAGGTC
CCTCACATAGAATTAAAAAGACCGTACAGGTGGAGCAAGCCAAAGTTTTAATCAAAGAAGGTGGCGTTCAGTTATTGCTC
ACGATAGTGGACACTCCTGGGTTCGGTGATGCGGTGGACAATAGTAATTGTTGGCAGCCTGTTATTGACTACATTGATAG
CAAATTTGAGGATTATCTGAACGCGGAGTCTCGGGTGAACAGACGGCAAATGCCAGACAACAGGGTGCAGTGTTGCTTGT
ACTTCATCGCCCCATCAGGACATGGCCTCAAGCCCCTGGACATCGAGTTTATGAAACGCTTGCATGACAAGGTGAACGTC
ATCCCCCTCCTAGCCAAAGCGGATACGCTGACCCCTGAGGAGTGCCAGCAGTTCAAGAAGCAGATAATGAAAGAAATTCA
GGAGCATAAAATTAAAATATATGAATTTCCAGAAACAGATGATGAAGAAGAAAACAAGCTTGTTAAAAAGATAAAGGACC
GTTTACCTCTTGCTGTGGTTGGTAGTAACACAATCATTGAAGTTAATGGCAAGAGGGTCCGAGGAAGGCAGTACCCTTGG
GGTGTGGCGGAAAGTTGAAAATGGTGATCATTGTGATTTCACAATTCTAAGAAACATGTTGATAAGAACCCACATGCAGG
ACCTGAAGGATGTGACGAACAACGTGCGCTATGAGAATTACAGGAGCCGCAAGCTGGCGGCTGTGACA

Alignment

ORF - retro_meug_1847 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.2 %
• Parental protein coverage: 83.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYKDRKLLNAEERINQTVEILKHTV
          YVGFA.LPNQV.RKSVK.GF.FTLMV.GESGLGKSTL.NSLFLTDLY..........RI..TV......V
Retrocopy YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSS-EYPGPSHRIKKTVQVEQAKV

Parental  DIEEKGVKLKLTIVDTPGFGDAVNNTQCWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPF
          .I.E.GV.L.LTIVDTPGFGDAV.N..CW.P..DY.D..FE.Y...ES..NR....DNRV.CCLYFI.P.
Retrocopy LIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS

Parental  GHGLRPVDVEFMKALHEKVNIVPLIAKADCLVPGEIRKLKERIREEIDKFGIKVYQFPECDSDEDEEFKQ
          GHGL.P.D.EFMK.LH.KVN..PL.AKAD.L.P.E....K..I..EI....IK.Y.FPE.D...DEE...
Retrocopy GHGLKPLDIEFMKRLHDKVNVIPLLAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD---DEEENK

Parental  QDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWGIVE-VENQAHCDFVKLRNMLIRTHMHDLKDVTCDV
          .....K...P.AV.GSNT..E..G.RVRGR.YPWG..E.VEN..HCDF..LRNMLIRTHM.DLKDVT..V
Retrocopy LVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAE>VENGDHCDFTILRNMLIRTHMQDLKDVTNNV

Parental  HYENYRAHCIQQMT
          .YENYR.......T
Retrocopy RYENYRSRKLAAVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1847 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1847 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006112	1 retrocopy	retro_meug_1193,
Macropus eugenii	ENSMEUG00000015556	3 retrocopies	retro_meug_1227, retro_meug_1847 , retro_meug_227,
Macropus eugenii	ENSMEUG00000016519	1 retrocopy	retro_meug_39,