RetrogeneDB ID: retro_meug_227

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_667:24728..25754(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEPT5
• Ensembl ID: ENSMEUG00000015556
• Aliases: None
• Description: septin 5 [Source:HGNC Symbol;Acc:9164]

Sequence

>retro_meug_227
GAAAGCTACGTGGGATTTGCGAATCTCCCAAATCAAGTATACAGAAAATCTGTGAAGAGAGGATTTGAGTTCACGCTTAT
GGTAGTAGGAGAATCTGGATTGGGGAAGTCGACGTTAATCAACTCATTATTCCTAACAGACTTGTATTCTTCCGAGTACC
CAGGTCCCTCACATAGAATTAAAAAGACCGTACAGGTGGAGCAAGACAAAGTTTTAATCAAAGAAGGTGGCGTTCAGTTA
TTGCTCACGATAGTGGACACTCCTGGATTCGGTGATGCGGTGGACAATAGTAATTGTTGGCAGCCTGTTATTGACTACAT
TGATAGCAAATTTGAGGATTATCTGAACGCGGAGTCTCGGGTGAACAGACGGCAAATGCCAGACAACAGGGTGCAGTGTT
GCTTGTACTTCATCGCCCCATCAGGACATGGCCTCACGCTCCTGGACATCGAGTTTATGAAACGCTTGCATGACAAGGTG
AACGTCATCCCCCTCATCGCCAAAGCGGATATGCTGACCCCTGAGGAGTGCCAGCAGTTCAAGAAGCAGATAATGAAAGA
AATTCAGGAGCATAAAATTAAAGTATATGAATTTCCAGAAACAGATGATGAAGAAGAAAACAAGCTTGTTAAAAAGATAA
AGGACCGTTTACCTCTTGCTGTGGTTGGTAGTAACACGATCATTAAAGTTAATGGCAAGAGGGTCCGAGGAAGGCAGTAC
CCTTGGGGTGTGGCGGAAGTTGAAAATGGTGATCATTGTGATTTCACAATTCTAAGAAACATGTTGATAACCCACATGCA
GGACCTGAAGGATGTGACGAACAACGTGCACTATGAGAATTACAGGAGCCGCAAGCTGGCGGCTGTGACATACAACGGTG
TGGACAACAACAAGAACAAGGGACAGCTGACCAAGAGCCCCCTGGCCCAAATGGAGGAAGAGAGAAGGGAGCACGTGGCT
AAGATGAAGAAAATGGTGATGGAGATGGAGCAGGTGTTTGAGATGAAAGTCAAAGAGAAGGTGCAG

Alignment

ORF - retro_meug_227 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.18 %
• Parental protein coverage: 98.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYKDRKLLNAEERINQTVEILKH
          ..YVGFA.LPNQV.RKSVK.GF.FTLMV.GESGLGKSTL.NSLFLTDLY..........RI..TV.....
Retrocopy ESYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSS-EYPGPSHRIKKTVQVEQD

Parental  TVDIEEKGVKLKLTIVDTPGFGDAVNNTQCWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFIS
          .V.I.E.GV.L.LTIVDTPGFGDAV.N..CW.P..DY.D..FE.Y...ES..NR....DNRV.CCLYFI.
Retrocopy KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA

Parental  PFGHGLRPVDVEFMKALHEKVNIVPLIAKADCLVPGEIRKLKERIREEIDKFGIKVYQFPECDSDEDEEF
          P.GHGL...D.EFMK.LH.KVN..PLIAKAD.L.P.E....K..I..EI....IKVY.FPE.D...DEE.
Retrocopy PSGHGLTLLDIEFMKRLHDKVNVIPLIAKADMLTPEECQQFKKQIMKEIQEHKIKVYEFPETD---DEEE

Parental  KQQDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTCD
          .......K...P.AV.GSNT.....G.RVRGR.YPWG..EVEN..HCDF..LRNMLI.THM.DLKDVT..
Retrocopy NKLVKKIKDRLPLAVVGSNTIIKVNGKRVRGRQYPWGVAEVENGDHCDFTILRNMLI-THMQDLKDVTNN

Parental  VHYENYRAHCIQQMTSKLTQDNRIESPIPILPVPTPDTE-TEKLIKMKDEELRRMQEMLQKMKQQMQ
          VHYENYR.......T......N.........P......E..E...KMK.......Q....K.K...Q
Retrocopy VHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMVMEMEQVFEMKVKEKVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_227 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_227 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006112	1 retrocopy	retro_meug_1193,
Macropus eugenii	ENSMEUG00000015556	3 retrocopies	retro_meug_1227, retro_meug_1847, retro_meug_227 ,
Macropus eugenii	ENSMEUG00000016519	1 retrocopy	retro_meug_39,