RetrogeneDB ID: retro_meug_1956

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold74343:4121..4642(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DTNBP1
• Ensembl ID: ENSMEUG00000014875
• Aliases: None
• Description: dystrobrevin binding protein 1 [Source:HGNC Symbol;Acc:17328]

Sequence

>retro_meug_1956
GAGCTAAAGGCAGAGTGTACTCAGAAGGTGCTAGATATGAAACGCAGCCAACAGCTGAAACTAAAGAAATGCTAGAAATT
CTTTGAAGAAGCCTTCCAGCAGGACATGGAGCAGTACCTTTCCACAGGCTATCTGCTGATAGCTGAACAATGAGAGCCCA
TAGGCAGCATGTCATCCATGGAAGTAAATATAGATATGCTAGAACAGATGTACCTAATGGACATGTCTGATCATGAAGCC
CTGGACATCTTTCTGAACTCTAGAGAAGGCAGCGTGCTAACTCTGACTTAGGGCCTGATTTCAGGACCTGCCAGAATAAA
ATAAGCCTTGAGGTTCCCAATTGCTCTGCAACTCAAAGCACACTGTCTTTCTTATCCTCATAGTGCACTGACTCTGTCAC
CCAGGAGAATAGTGAAAGTGGAGAGTCCCCTTCTGTTCAGTCTGATGAGGAAAAAGTCCAAATGGACGCTGCTCTAGCTA
CTATAAAGGCCAGGTCAGATGTCAGTGATGAAAGTGACTCT

Alignment

ORF - retro_meug_1956 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.57 %
• Parental protein coverage: 50.14 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM
          EL.AE.TQKVLDM..SQQLKLK...KFFEEAFQQDMEQYLSTGYL.IAE..EPIGSMSSMEVN.DMLEQM
Retrocopy ELKAECTQKVLDMKRSQQLKLKKC*KFFEEAFQQDMEQYLSTGYLLIAEQ*EPIGSMSSMEVNIDMLEQM

Parental  DLMDMSDQEALDVFLNSGEGNAL-SPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSE
          .LMDMSD.EALD.FLNS.EG..L....LGPD..TCQN.ISLEVPN.SA.QS..S.LSS.CTDSVTQENSE
Retrocopy YLMDMSDHEALDIFLNSREGSVL<NSDLGPDFRTCQNKISLEVPNCSATQSTLSFLSS*CTDSVTQENSE

Parental  SGESPVVQSDEEEVQVDTALATIKARSDVSDESDS
          SGESP.VQSDEE.VQ.D.ALATIKARSDVSDESDS
Retrocopy SGESPSVQSDEEKVQMDAALATIKARSDVSDESDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1956 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1956 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014875	2 retrocopies	retro_meug_1956 , retro_meug_263,
Myotis lucifugus	ENSMLUG00000016460	1 retrocopy	retro_mluc_1326,