RetrogeneDB ID: | retro_meug_263 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | GeneScaffold_8334:19915..20437(+) | ||
| Located in intron of: | ENSMEUG00000003088 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DTNBP1 | ||
| Ensembl ID: | ENSMEUG00000014875 | ||
| Aliases: | None | ||
| Description: | dystrobrevin binding protein 1 [Source:HGNC Symbol;Acc:17328] |
Retrocopy-Parental alignment summary:
>retro_meug_263
GAGCTAGATGCAGAACACACTCAGAAGGTGCTCGATATGGAACACAGCCAACAGCTGAAACTAAAGGAGCGCCAGAAATT
CTTTGAAGAAGCCTTCCAGCAGGACATGGAGCAGTACCTTTCCACAGGCTACCTGCAGATAGCTGAGCGACGAGAGCCTA
TAGGCAGCATGTCATCCATGGAAGTCAATGTAGACATGCTAGAACAGATGGACCTAATGGATATGTCTGATCAAGAGGCC
CTGGATGTCTTTCTGAACTCTGGAGAAGGCAATGCGCTCTCTCCTGGATTAGGGCCTGATGCCAGTACTTGTCAGAATGA
AATAAGCCTTGAGGTTCCCAACCACTCTGCATCTCAGAGCAAACCGTCTTCCTTATCCTCAGTCTGCACTGACTCTGTCA
CCCAAGAGAATAGTGAAAGTGGAGAGTCCCCTGTTGTTCAGTCTGATGAGGAAGAAGTCCAGGTGGACACTGCTCTGGCT
ACTATAAAGGCCAGGTCAGATGTCCGTGATGAAAGTGACTCT
ORF - retro_meug_263 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.43 % |
| Parental protein coverage: | 50.14 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM |
| ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM | |
| Retrocopy | ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM |
| Parental | DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES |
| DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES | |
| Retrocopy | DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES |
| Parental | GESPVVQSDEEEVQVDTALATIKARSDVSDESDS |
| GESPVVQSDEEEVQVDTALATIKARSDV.DESDS | |
| Retrocopy | GESPVVQSDEEEVQVDTALATIKARSDVRDESDS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_263 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_263 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000014875 | 2 retrocopies |
retro_meug_1956, retro_meug_263 ,
|
| Myotis lucifugus | ENSMLUG00000016460 | 1 retrocopy |