RetrogeneDB ID: retro_meug_2010

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold79133:6685..7308(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZMYND19
• Ensembl ID: ENSMEUG00000011727
• Aliases: None
• Description: zinc finger, MYND-type containing 19 [Source:HGNC Symbol;Acc:21146]

Sequence

>retro_meug_2010
GAGTACACACTGATAGATGAAGAAGTCATTCCACTGGTGGAAAGTTACTCTTTTGAGACAAGAATGGAAGTAGACATTGC
TGGAAATGGTGCTAAAATATCTGCTTATGCTTTTAACAAAAACCATGAAAGGGGATCTGGACATTTACTTCACGAGTTGT
CGTGGGAATGACAGAAAGGAGGGATTGTTCCAGGACTTCAGGTGATGTGTCTTAATGTAGTAACAGCGGACAGATGACTA
GAGTCATGTAGTTAGTGCCATGAGGTTGGAGACACGAAGCAGAAGAAATCGCTAGTATACAAAGGGAACAGAGCTTGTGC
TGGCAAGCAATTCAGCAGCTTCTCACTGATCCTACAGAACAACAGTTTCCCTTCTTGAATATTACTTGTTATTATAATGC
TAATGAAGATATGGTAAAAGAAGGGAATTCCTCCTCATACTATGAATGCCATTATCTGCTATGTACAATGACTAAAAAGG
AACTGTGTGAATTCAGCATCTGTGGCTAGCATCAGGTGGGCAGGTACTGTGGTTCTCATTGCCAGCAAAAGGACTGGTCT
GCTCACTAGAAACACTGCTAGAAGAAGAAATAAATCTTGCAGCAAGAGCTTGAGCCAGAGCAA

Alignment

ORF - retro_meug_2010 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.14 %
• Parental protein coverage: 99.52 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNRGRGSGRLLHELLWERHRGGIAPGFQVVH
          .YTLIDE..IPLVESYSFE.RMEVD..GNGAKI.AYAF.KN..RGSG.LLHEL.WE...GGI.PG.QV..
Retrocopy EYTLIDEEVIPLVESYSFETRMEVDIAGNGAKISAYAFNKNHERGSGHLLHELSWE*QKGGIVPGLQVMC

Parental  LNAVTVDNRLDNLQ-LVPWGWRPKAEEISSKQREQSLYWLAIQQ-STDPIEEQFP-VNVTRYYNANGDVV
          LN.VT.D..L.....LVP.GWR..AEEI.S.QREQSL.W.AIQQ..TDP.E.QFP..N.T.YYNAN.D.V
Retrocopy LNVVTADR*LESCS<LVP*GWRHEAEEIASIQREQSLCWQAIQQLLTDPTEQQFPFLNITCYYNANEDMV

Parental  EEEENSCTYYECHYPPCTMIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHCREKKRTFQQELEPER
          ..E.NS..YYECHY..CTM..K.L.EF.ICG..QV.RYCGS.CQQKDW.AH.KHC..KK...QQELEPE.
Retrocopy -KEGNSSSYYECHYLLCTMTKKELCEFSICG*HQVGRYCGSHCQQKDWSAH*KHC*KKK*ILQQELEPEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2010 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2010 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000006644	2 retrocopies	retro_dnov_1389, retro_dnov_1468,
Dipodomys ordii	ENSDORG00000008360	1 retrocopy	retro_dord_390,
Equus caballus	ENSECAG00000012412	1 retrocopy	retro_ecab_903,
Echinops telfairi	ENSETEG00000005023	1 retrocopy	retro_etel_1068,
Homo sapiens	ENSG00000165724	1 retrocopy	retro_hsap_1367,
Gorilla gorilla	ENSGGOG00000006875	1 retrocopy	retro_ggor_1065,
Macropus eugenii	ENSMEUG00000011727	1 retrocopy	retro_meug_2010 ,
Macaca mulatta	ENSMMUG00000019610	1 retrocopy	retro_mmul_2195,
Monodelphis domestica	ENSMODG00000017172	1 retrocopy	retro_mdom_764,
Mus musculus	ENSMUSG00000026974	3 retrocopies	retro_mmus_1433, retro_mmus_2466, retro_mmus_942,
Nomascus leucogenys	ENSNLEG00000009236	1 retrocopy	retro_nleu_1071,
Tursiops truncatus	ENSTTRG00000010812	1 retrocopy	retro_ttru_900,