RetrogeneDB ID: retro_meug_2042

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold83117:5495..5867(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000003479
• Aliases: None
• Description: None

Sequence

>retro_meug_2042
GCCCCAGACTTTTACTTTAAGGAAATCTCCTTGACTTGGGTGAGGGGTGATGAGCAACAGCTGCAGGAGACCCAGCTTGC
AGGAGATGGCACCTTTCAGAAATGGGCAGCTGTAGAAGTGACCTTGGGCCTGGAAGGCAAATATACCTGCCAAGTTCAGC
CCCAGGGGCTGTTTGAGCCCCTCACCCAGAAGTGGGAGCCAGAGTCCTCACCCACCTCACTCACAGTGGGGGGCATTGCT
GCCGGCCTCCTCCTCACTGAGGTCATTGCCAGATTTTGTGATCTGAAGAAGAATTCAGGTAGAAAAGGAGGTGATTATGT
TCCAGCTGCAGGCAATGACAGTGCCCTTGGGTCAGATGTCTCTCTCACAGCC

Alignment

ORF - retro_meug_2042 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.23 %
• Parental protein coverage: 53.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AHDFYPKEISLTWLRDGEEQPQDTEFIETRPAGDGTFQKWAAVEVTSGQEGRYTCRVQHEGLPEPLTLQW
          A.DFY.KEISLTW.R.G.EQ.......ET..AGDGTFQKWAAVEVT.G.EG.YTC.VQ..GL.EPLT..W
Retrocopy APDFYFKEISLTWVR-GDEQ----QLQETQLAGDGTFQKWAAVEVTLGLEGKYTCQVQPQGLFEPLTQKW

Parental  EPQSSLTWLIVGAIAAGLLLTAVIVGVGIWKRKHSGRKEGDYVPAAGNDSAQGSDISLTA
          EP.SS.T.L.VG.IAAGLLLT.VI......K.K.SGRK.GDYVPAAGNDSA.GSD.SLTA
Retrocopy EPESSPTSLTVGGIAAGLLLTEVIARFCDLK-KNSGRKGGDYVPAAGNDSALGSDVSLTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2042 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2042 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000029181	1 retrocopy	retro_lafr_1203,
Macropus eugenii	ENSMEUG00000003479	2 retrocopies	retro_meug_2042 , retro_meug_570,
Mus musculus	ENSMUSG00000067201	1 retrocopy	retro_mmus_2265,
Ornithorhynchus anatinus	ENSOANG00000003398	1 retrocopy	retro_oana_1,