RetrogeneDB ID: retro_meug_570

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold138337:5818..6256(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000003479
• Aliases: None
• Description: None

Sequence

>retro_meug_570
GTGACCCGCCACATTGCCACCCGTAGGGAGATGACCTGCGGTGCCAGGCCCAGGACTTTTACCCTAAGGAGATCTCCCTG
ACTTGGCTGAGGGATGGAGAGGAACAACCCCCAGGACACAGAGTTCATTGAGACCAGGCCTGCAGGAGATGGCACCTTCC
AGAAGTGGGCAGCTGTGGATGTGACCTCGGGCCAGGAAGGGAGATACACCTGCCGAGTTCAGCACGAGGGACTGTCTGAG
CCCCTCACCCTGCAGTGGGAGCCACAGTCCTCATCCACCAGGCTCATTGTGGGAGCCATTCCTGCCGTCCTCCTCCTCCT
CATTGCGGTCTTAGCTGGAGTTGGCATATGGAGAAAGAATTCAGGTGGAAAAGGAGGTGATTATGTTCAGGCTGCCGGCA
ATGACAGTGCACAGGGGTCAGATATCTCTCTAACAGCC

Alignment

ORF - retro_meug_570 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.89 %
• Parental protein coverage: 60.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VTRHTAPHGEVT-LRCRAHDFYPKEISLTWLRDGEEQP-QDTEFIETRPAGDGTFQKWAAVEVTSGQEGR
          VTRH.A...E.T.LRC.A.DFYPKEISLTWLRDGEEQP.QDTEFIETRPAGDGTFQKWAAV.VTSGQEGR
Retrocopy VTRHIATRREMT<LRCQAQDFYPKEISLTWLRDGEEQP>QDTEFIETRPAGDGTFQKWAAVDVTSGQEGR

Parental  YTCRVQHEGLPEPLTLQWEPQSSLTWLIVGAI-AAGLLLTAVIVGVGIWKRKHSGRKEGDYVPAAGNDSA
          YTCRVQHEGL.EPLTLQWEPQSS.T.LIVGAI.A..LLL.AV..GVGIW.RK.SG.K.GDYV.AAGNDSA
Retrocopy YTCRVQHEGLSEPLTLQWEPQSSSTRLIVGAIPAVLLLLIAVLAGVGIW-RKNSGGKGGDYVQAAGNDSA

Parental  QGSDISLTA
          QGSDISLTA
Retrocopy QGSDISLTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_570 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_570 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000029181	1 retrocopy	retro_lafr_1203,
Macropus eugenii	ENSMEUG00000003479	2 retrocopies	retro_meug_2042, retro_meug_570 ,
Mus musculus	ENSMUSG00000067201	1 retrocopy	retro_mmus_2265,
Ornithorhynchus anatinus	ENSOANG00000003398	1 retrocopy	retro_oana_1,