RetrogeneDB ID: | retro_meug_2049 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold8402:46578..47347(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSMEUG00000010849 | ||
Aliases: | None | ||
Description: | nuclear receptor binding factor 2 [Source:HGNC Symbol;Acc:19692] |
Percent Identity: | 68.2 % |
Parental protein coverage: | 94.83 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | AGKYEEAILCHQKAAXXXXXXXXXXXXXXAQLSLELQRDSHMKQLLLIQERWKRA-KREERWKAQQTPDE |
AGKY...ILCHQ..................QLSLELQRD.HMK.LLL.Q.RWKR....EERWK.QQTPD. | |
Retrocopy | AGKYKQVILCHQEVGTYLFETMKLTQSEQRQLSLELQRDIHMK*LLLFQDRWKRV<QLEERWKVQQTPDG |
Parental | TPHLLMSTRPLTEDGSEGPSVPRSQQFSPASVPGVLDRDPD-TLLFLLQKRKDPTELCPGSKVPKDDK-T |
..HLL.S.R.L.ED.SEGP..PRSQQFS.A.VPGVL..DP..TLLFL.Q.RK.P.EL.PGSKV.K..K.T | |
Retrocopy | NFHLL*SIRLLPEDRSEGPNMPRSQQFSSATVPGVLEKDPE<TLLFLPQTRKIPIELFPGSKVLKNAK<T |
Parental | TIEEQATKIADLKRHVEFLVA-DNERLRRENKQLRAEKAKLQKAPPEKELDVDADFVEKSELWSLPPSAQ |
TIE.QA.K.A.LK.HVEFLV..DNERL..ENKQLR.EK..L.KA.P.KELD.DADFVE.SELW.LPP.AQ | |
Retrocopy | TIEDQAIKVAVLK*HVEFLVT>DNERLMNENKQLRVEKVRLPKALPDKELDADADFVEESELWILPPPAQ |
Parental | TATASSPWQEFAASTGKSKDIPIPNLPPLDFPSPELPLLELSEDILKGLMN |
TAT.S.P.QEFAA.TGK.KDIPIPNLPPLDFPSPEL.LLEL.ED.LKGL.N | |
Retrocopy | TATPSFP*QEFAAITGKAKDIPIPNLPPLDFPSPELLLLELPEDVLKGLIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies |
retro_meug_1385, retro_meug_2049 , retro_meug_671,
|
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |