RetrogeneDB ID: | retro_mmus_1278 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:52861769..52862630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000095313 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nrbf2 | ||
Ensembl ID: | ENSMUSG00000075000 | ||
Aliases: | Nrbf2, NRBF-2 | ||
Description: | nuclear receptor binding factor 2 [Source:MGI Symbol;Acc:MGI:1354950] |
Percent Identity: | 99.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLL |
MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLL | |
Retrocopy | MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLL |
Parental | IQERWKRAKREERLKAQQSTERDGAPHLQAPPRPSEDAEGQSPLLSQPYIPSTERRLPEVQGVFDRDPDT |
IQERWKRAKREERLKAQQSTERDGAPHLQAPPRPSEDAEGQSPLLSQPYIPSTERRLPEVQGVFDRDPDT | |
Retrocopy | IQERWKRAKREERLKAQQSTERDGAPHLQAPPRPSEDAEGQSPLLSQPYIPSTERRLPEVQGVFDRDPDT |
Parental | LLFLLQQKNEPSEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGT |
LLFLLQQKNEPSEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGT | |
Retrocopy | LLFLLQQKNEPSEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGT |
Parental | AEKELDVDADFVEKSELWGLPSHSESAAASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDI |
AEKELDVDADFVEKSELWGLPSHSESAAASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDI | |
Retrocopy | AEKELDVDADFVEKSELWGLPSHSESAAASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDI |
Parental | LKGFMND |
LKGFM.D | |
Retrocopy | LKGFMTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .21 RPM |
SRP007412_heart | 0 .00 RPM | 3 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .46 RPM |
SRP007412_liver | 0 .00 RPM | 5 .73 RPM |
SRP007412_testis | 0 .00 RPM | 1 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies |
retro_mmus_1278 , retro_mmus_1279,
|
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |