RetrogeneDB ID: retro_meug_2055

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold84995:10388..10715(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006584
• Aliases: None
• Description: None

Sequence

>retro_meug_2055
GCTCTGGAAAAGAAAGAGTTCCTTGTATGGCAGCATGGTCTAGGAGTGAATGACTGAGCTCCCACTCAAGCTTGCCTGAC
TGTGTTTTTCTGGACAGGAGGAGGCAAAGAGGTCTTCTTATCTGGCTCCTTCAATAACTGGACAAAGCTACCCCTCACAA
GAAGCCAGAACAACTTTGTAGCAATCATGGACTTTCCAGGAGAACATCAGTACAAGTTCTTTATGAATGGTCAGTGTACC
AATGATGCATCTGAGCCAGTAGTGACCAACCAGCTTGGCACAATTAACAAGGTCATTCAGGTAAAGAAAACTAACTCTGA
AGTGTTT

Alignment

ORF - retro_meug_2055 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.27 %
• Parental protein coverage: 50.69 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  APEKEEFLAWQHDLEVNDRAPTQARPTVFRWTGGGKEVYLSGSFNNWTKLPLTRSHNNFVAILDLPEGEH
          A.EK.EFL.WQH.L.VND.APTQA..TVF.WTGGGKEV.LSGSFNNWTKLPLTRS.NNFVAI.D.P.GEH
Retrocopy ALEKKEFLVWQHGLGVND*APTQACLTVFFWTGGGKEVFLSGSFNNWTKLPLTRSQNNFVAIMDFP-GEH

Parental  QYKFFVDGHWTYDASEPTVTSQLGTINNVIQVKQTDFEVF
          QYKFF..G..T.DASEP.VT.QLGTIN.VIQVK.T..EVF
Retrocopy QYKFFMNGQCTNDASEPVVTNQLGTINKVIQVKKTNSEVF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2055 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2055 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006584	1 retrocopy	retro_meug_2055 ,
Monodelphis domestica	ENSMODG00000015269	1 retrocopy	retro_mdom_1984,
Ictidomys tridecemlineatus	ENSSTOG00000008615	1 retrocopy	retro_itri_1535,