RetrogeneDB ID: retro_meug_2120

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold92153:250..1597(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000001319
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BLMH
• Ensembl ID: ENSMEUG00000008938
• Aliases: None
• Description: bleomycin hydrolase [Source:HGNC Symbol;Acc:1059]

Sequence

>retro_meug_2120
GCGGGCCTGAGCCCCAGGAAGGTGGCGGCCGTGCTGCAGAAGCTCAGCGCGGACCCGCTGTTCTCCCTGGCCCAGAACGT
GGGCAGCAGCCACGACCTGCTGGACGTGTGTCTGCGGCGCTCCACCGTGCAGGACACGCAGCACGTCTTCCAGCACGCCG
TGCCCCAGGAGGGCAAGCCCGTCACCAACCAGAAGAACTCAGGGAGATGCTGGATCTTTTCATGTCTGAACGTTATGAGA
CTGCCTTTCATGAAAAAATTAAATATTGAAGAATTCGAATTCAGTCATTCTTACCTGTTTTTCTGGGACAAGGTTGAACG
CTGTTGCTTCTTTTTGAATGCCTTTGTTGAAACGGCTGAGGAACCAGAGGATGGAAGGCTGGTGCAGTACTTACTTACGA
ATCCTGCAAATGACGGTGGACAATGGGATATGTTAGTCAATATTGTTGAAAAATATGGGGTTGTTCCTAAGAAGTGCTTC
CCTGAGTCTCATACAACAGAAGCATCTAGAAGAATGAATGACATTCTGAATCACAAGATGAGAGAATATTGTATACGACT
TAGAAACTTGGTGAAAAGTGGAGCAACAGAAGAAGATATCTGTACGACCCAGGACACCATGATGGAAGAGGTCTTCCGAG
TGGTCAGCATCTGCTTGGGCACCCCACCAGACAAATTTACCTGGGAGTATCGAGACAAGGATAAGACTTACCATAAGATT
GGACCCATTTCACCCTTGGAGTTCTACAGGGAACATATCAAGCCTTTCTTCAACATGCAGGACAAGATTTGTCTCGTGAA
TGACCCTCGGAGTCAGCATAAGTACAACAGGCTGTACACTGTGGAATACTTGAGCAATATGATTGGTGGGAGAAAAACCC
TCTACAACAACCAGCCCATTGACTTCTTGAAAAAGATGGTTGCAGCCTCCATTAAAGAAGGAGAGGCCGTGTGGTTTGGC
TGCGATGTTGGAAAACACTTCAACGGAAAGCTGGGCATCAGTGACATGCAGATTTATGACCATGAGCTGGTGTTTGGTGT
CTCCTTGAAGAACATGAACAAAGCAGAGAGGTTGACTTTTGGCGAGTCCCTGATGACCCATGCCATGACCTTCACGGCCG
TCACGGAGGATGCTCGTGAGGGAACGTATGAAAAGTGGAGAGTGGAGAATTCCTGGGGTGAAGACCATGGCCACAAAGGC
TACCTGTGCATGACGGACCAGTGGTTCTCCGATTATGTCTACGAAGTGGTTGTAGACAAGAAACATGTGCCAGAAGATGT
GCTCGCCGTCCTGAAGCAGGAGCCCATTGTGCTCCCGGCCTGGGACCCTATGGGGGCTTTGGCTAAA

Alignment

ORF - retro_meug_2120 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.11 %
• Parental protein coverage: 85.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ASLSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC
          A.LSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC
Retrocopy AGLSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC

Parental  WIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVETAEEPEDGRLVQYLLTNPANDGG
          WIFSCLNVMRLPFMKKLNIEEFEFS.SYLFFWDKVERC.FFLNAFVETAEEPEDGRLVQYLLTNPANDGG
Retrocopy WIFSCLNVMRLPFMKKLNIEEFEFSHSYLFFWDKVERCCFFLNAFVETAEEPEDGRLVQYLLTNPANDGG

Parental  QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE
          QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE
Retrocopy QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE

Parental  VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT
          VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT
Retrocopy VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT

Parental  VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK
          VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK
Retrocopy VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK

Parental  NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFSEYVYEVVVDK
          NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFS.YVYEVVVDK
Retrocopy NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFSDYVYEVVVDK

Parental  KHVPEDVLAVLKQEPIVLPAWDPMGALAK
          KHVPEDVLAVLKQEPIVLPAWDPMGALAK
Retrocopy KHVPEDVLAVLKQEPIVLPAWDPMGALAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2120 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2120 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021370	1 retrocopy	retro_btau_1510,
Callithrix jacchus	ENSCJAG00000013781	1 retrocopy	retro_cjac_2998,
Cavia porcellus	ENSCPOG00000005048	1 retrocopy	retro_cpor_896,
Macropus eugenii	ENSMEUG00000008938	1 retrocopy	retro_meug_2120 ,
Rattus norvegicus	ENSRNOG00000003563	1 retrocopy	retro_rnor_566,
Tursiops truncatus	ENSTTRG00000016341	1 retrocopy	retro_ttru_1915,
Vicugna pacos	ENSVPAG00000003571	1 retrocopy	retro_vpac_74,