RetrogeneDB ID: | retro_meug_277 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_9198:45967..46462(+) | ||
Located in intron of: | ENSMEUG00000000179 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRM2 | ||
Ensembl ID: | ENSMEUG00000000121 | ||
Aliases: | None | ||
Description: | ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:10452] |
Percent Identity: | 90.36 % |
Parental protein coverage: | 50.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEEKVKEII |
R.VAFAAVEGIF.SGSFASIFWLKK..LMPGLTFS.ELISRDEGLHCDFACLMFKH.VHKPSEEKVKEII | |
Retrocopy | RLVAFAAVEGIFLSGSFASIFWLKK*DLMPGLTFSKELISRDEGLHCDFACLMFKHMVHKPSEEKVKEII |
Parental | INAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRAENPFDFMENISLEGKTNFFE |
..AV.IEQEFLTEALPVKLIGMNCTLMKQYIEFVADR.MLELGF.KI.RAENPFDFM.NIS.EGKTNFFE | |
Retrocopy | -DAVKIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRVMLELGFSKILRAENPFDFMDNISSEGKTNFFE |
Parental | KRVGEYQRMGVMSSPTENSFTLDADF |
KRVGEYQR.GVMSSP.ENSFTLDADF | |
Retrocopy | KRVGEYQRTGVMSSPAENSFTLDADF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003409 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006533 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008652 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009755 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015797 | 2 retrocopies | |
Homo sapiens | ENSG00000171848 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000121 | 3 retrocopies |
retro_meug_1450, retro_meug_199, retro_meug_277 ,
|
Microcebus murinus | ENSMICG00000012789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010596 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002057 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014763 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020649 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013733 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007075 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012656 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023272 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021742 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017209 | 1 retrocopy |