RetrogeneDB ID: | retro_mluc_794 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429776:11918814..11919435(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRM2 | ||
Ensembl ID: | ENSMLUG00000010596 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.97 % |
Parental protein coverage: | 53.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | ADKENTPP-SLNGTRVLASKTARRIFQEPAEPKTPVPAPGAQEEPLLREN-PR-RFVVFPIEYHDIWQMY |
ADKEN.PP.SL.GTRVLASKTARRIF.EPA.PK..VPAPG.Q.EPL.REN.PR.RFV..P.EYHD.WQM. | |
Retrocopy | ADKENMPP<SLSGTRVLASKTARRIFPEPAKPKAQVPAPGVQDEPLPREN<PR<RFVTSPMEYHDLWQMD |
Parental | KKAE-ASFWTAEEVDLSKDLQHWEALKSDERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYG |
KKAE.ASFWTAEEV.LS.D.QHW.AL...ER.FISH.LAF..AS.GI.NENLVERFSQEVQITEARCFY. | |
Retrocopy | KKAE<ASFWTAEEVALSQDRQHWAALEPEERHFISH-LAFLVASHGITNENLVERFSQEVQITEARCFYS |
Parental | FQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKA-DWALRWIGDKEATYGERVVAFAAVE |
FQIAMENIHSEMYSLLIDT.IKD.KERE.LFNA.ETMPC.KK.A..WALRWI..KE..YGERVVAFA.VE | |
Retrocopy | FQIAMENIHSEMYSLLIDTDIKDAKERELLFNAVETMPCAKKAA>GWALRWIRNKETAYGERVVAFATVE |
Parental | GIFF |
GIFF | |
Retrocopy | GIFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003409 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006533 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008652 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009755 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015797 | 2 retrocopies | |
Homo sapiens | ENSG00000171848 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000121 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000012789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010596 | 1 retrocopy |
retro_mluc_794 ,
|
Macaca mulatta | ENSMMUG00000002057 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014763 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020649 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013733 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007075 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012656 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023272 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021742 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017209 | 1 retrocopy |