RetrogeneDB ID: retro_meug_459

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold117788:4346..5107(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TAZ
• Ensembl ID: ENSMEUG00000012657
• Aliases: None
• Description: tafazzin [Source:HGNC Symbol;Acc:11577]

Sequence

>retro_meug_459
ATGCCGCTGAATGTGAAATGGCCTTTCCCCTCGGTGCCTCCTCTGTCTTGGGCTCCAGCCAGTAGTGTGGTTATTGTGGG
TACCTACAGCTGCTTCTGGACCAAGCACATTAACCGCTTTAATGTGTACAAGTAGGTACTCTATCAACTGATCGAGAATT
GAGATCCTGGCACACCGCTAATCACTGTCTCCAATCACCAGTCCTGAATGGATGACCTACACCTCTGGGGGATTCTGAAA
CTCCACCACATCTGGAACCTGAGGCTGAGGAGGTGGACCCCAGCAGCTGCAGTATCTGTTTCACCAAGGAGCTGCATTTC
CATTTCTTCAGCTTGGGAAAATGTGTCCCTGTATGCCAAGGGGAGGGCGTCTACCAGAAAGGGATTGACTTTATCCTGGA
GAAACTCAACCATGAGCATTGGGTCCATATTTTCCCTAAAGGAAAAGTGAACATGAGTCAGGAATTTCTTTGTTTCAAGT
GGGGAACAGGGTGCCTGATTGCTGAGTGTCACCTTAACCCCATCATCCTTCCACTCTGGCACACTGGAATGAGTGATGTG
CTTCCAAACGCTCCACCCTATTTTCCCAGATTTGGACAGAAAATCACAGTGCTTATTGGGAAGCTATTCAGCGTCCTGCC
TGTTCTTGAGCATCTATGAGATGAGAATAAGTCAGCAGTGGAGAAGCGCAAAGCCCTGACAGACTTTATCCAGGATGAGT
TTCAGAGCCTGAAGGCACAGGCAGAATTACTCTACAATCCT

Alignment

ORF - retro_meug_459 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.72 %
• Parental protein coverage: 98.09 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPLNVKWPFPSVPPLSWTLASSVIMGLVGTYSCFWTKYMNRLNVYNKEVLYELIENRDPGTPLITVSNHQ
          MPLNVKWPFPSVPPLSW..ASSV....VGTYSCFWTK..NR.NVY.K.VLY.LIEN.DPGTPLITVSNHQ
Retrocopy MPLNVKWPFPSVPPLSWAPASSVV--IVGTYSCFWTKHINRFNVY-K*VLYQLIEN*DPGTPLITVSNHQ

Parental  SCMDDPHLWGILKLRHIWNLRLMRWTPAAA-DICFTKELHSHFFSLGKCVPVCRGDGVYQKGMDFILEKL
          S.MDD.HLWGILKL.HIWNLRL.RWTPAAA..ICFTKELH.HFFSLGKCVPVC.G.GVYQKG.DFILEKL
Retrocopy S*MDDLHLWGILKLHHIWNLRLRRWTPAAA<SICFTKELHFHFFSLGKCVPVCQGEGVYQKGIDFILEKL

Parental  NNGDWVHIFPDGKVNMSQEFLRFKWGIGRLIAECHLNPIILPLWHIGMSDVLPNAPPYFPRFGKKITVLI
          N...WVHIFP.GKVNMSQEFL.FKWG.G.LIAECHLNPIILPLWH.GMSDVLPNAPPYFPRFG.KITVLI
Retrocopy NHEHWVHIFPKGKVNMSQEFLCFKWGTGCLIAECHLNPIILPLWHTGMSDVLPNAPPYFPRFGQKITVLI

Parental  GKPFSTLPVLERLRAENKSPVEMRKTLTDFIQDEFQSLKAQAELLHSP
          GK.FS.LPVLE.L..ENKS.VE.RK.LTDFIQDEFQSLKAQAELL..P
Retrocopy GKLFSVLPVLEHL*DENKSAVEKRKALTDFIQDEFQSLKAQAELLYNP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_459 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_459 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007456	1 retrocopy	retro_btau_1427,
Macropus eugenii	ENSMEUG00000012657	2 retrocopies	retro_meug_325, retro_meug_459 ,
Sarcophilus harrisii	ENSSHAG00000001896	1 retrocopy	retro_shar_578,