RetrogeneDB ID: retro_meug_480

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold121120:4108..4468(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CLTA
• Ensembl ID: ENSMEUG00000010858
• Aliases: None
• Description: clathrin, light chain A [Source:HGNC Symbol;Acc:2090]

Sequence

>retro_meug_480
ATGGCTGAGGTAGACCCATTTGGTGCGGCCGCCGCTCTGGCCTCTGCCCTGGGGGGTCCCATAGTGGGTAATGGGGTGGT
GAGCAGGAGCAGCAGCGAAAAAGGTCCAGCCGCGGCCTTCCTAGCCCAGCAGGAGAGCAAGATCAAGAACGCCAAAGCCT
TCAGCATCCTTGACAGCAGCAGTGTGCCCACCTTCCTGCAAGGAGAGCCTCCCAGGGGCCCGGATGCTATTGATGGAGTG
ATGAATGGAGAACACTACCAGGAGAGAAATGGTCCAACTGACAGCTATGCAGCTATTTCACAAGTGGATAGATTACAGTC
AGAACCAGAGAGCATCCGTAAACAGACAGAACAAATGAAA

Alignment

ORF - retro_meug_480 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.1 %
• Parental protein coverage: 52.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAEVDPFGAAAAPAPAPGGPAVGNGVASGGSSEEDPAAAFLAQQESEIAGIENDEGFSILDSGACRP-LQ
          MAEVDPFGAAAA.A.A.GGP.VGNGV.S..SSE..PAAAFLAQQES.I....N...FSILDS......LQ
Retrocopy MAEVDPFGAAAALASALGGPIVGNGVVSRSSSEKGPAAAFLAQQESKI---KNAKAFSILDSSSVPTFLQ

Parental  GEPPGGPDAIDGVMNGEYYQDNYVTNSQVDLLSEPETIKCREANSQKQEAEWK
          GEPP.GPDAIDGVMNGE.YQ............S.............KQ....K
Retrocopy GEPPRGPDAIDGVMNGEHYQERNGPTDSYAAISQVDRLQSEPESIRKQTEQMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_480 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_480 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001137	1 retrocopy	retro_btau_327,
Homo sapiens	ENSG00000122705	2 retrocopies	retro_hsap_4022, retro_hsap_955,
Macropus eugenii	ENSMEUG00000010858	1 retrocopy	retro_meug_480 ,
Macaca mulatta	ENSMMUG00000006132	2 retrocopies	retro_mmul_2319, retro_mmul_785,
Monodelphis domestica	ENSMODG00000002610	1 retrocopy	retro_mdom_1148,
Nomascus leucogenys	ENSNLEG00000003874	1 retrocopy	retro_nleu_659,
Pongo abelii	ENSPPYG00000019069	1 retrocopy	retro_pabe_3300,
Pan troglodytes	ENSPTRG00000020930	1 retrocopy	retro_ptro_2727,