RetrogeneDB ID: retro_meug_481

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold12113:68955..69575(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000008941
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CRIP2
• Ensembl ID: ENSMEUG00000010504
• Aliases: None
• Description: cysteine-rich protein 2 [Source:HGNC Symbol;Acc:2361]

Sequence

>retro_meug_481
ATGGCCTCCAAGTGCCCCAAGTGCGACAAAATCGTGTACTTTGCTGAAAAAGTGAGTTCCCTGAGCAAGGACTGGCATAA
ATTTTGTCTCAAGTGTGAGTGTTGCAGCAAGACACTGACACCCGGAGGGCATGCAGAGCACGATGGGAAGCCGTTTTGCC
CCAAGCCCTGCTATGCCACGTTGTTTCTACCTAAATGTGTAAACTTTGGGGGTGCAGGCTCTTACATCTATGAGAAACCA
CAGGCAGAGGAGGCTCCTGTCACTGGCCCTACTGAGCACTTAGTTCGAGCAGAGGATTGCAAAGTCAGTGGTCCCTCGAG
AGGGCCCTGCAAAGCTTCCAGCGTCACGATCTTCACCAGAGAGCCCAACATGTGCCCTCGACGTAATAAGAGGGTCTGTT
TTGAGGAGAAGGTGACATCCCTGGGAAAGGATTGGCACTGGCCTTGCCTTCGCTGCGAGCGTTGTGGAAAACACTGACAC
CTGGTGGACATGCAGAGCATGATGGACAACCATATTGCCATAAACCTTGCTATGGAATTCTCTTTGGACCAAAAGGAGTG
AATACTGGGGCAGTGGGGAGCTACATCTATGACAAAGATCCTGAAGTTAAGGATCAGCCC

Alignment

ORF - retro_meug_481 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.87 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIG
          MASKCPKCDK.VYFAEKVSSL.KDWHKFCLKCE.CSKTLTPGGHAEHDGKPFC.KPCYATLF.PK.VN.G
Retrocopy MASKCPKCDKIVYFAEKVSSLSKDWHKFCLKCECCSKTLTPGGHAEHDGKPFCPKPCYATLFLPKCVNFG

Parental  GAGSYIYEKPQAEEAPITGPIEHSVRAEDRKVSGPSRGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTS
          GAGSYIYEKPQAEEAP.TGP.EH.VRAED.KVSGPSRGP.KASSVT.FT.EPNMCPR.NKRV.F.EKVTS
Retrocopy GAGSYIYEKPQAEEAPVTGPTEHLVRAEDCKVSGPSRGPCKASSVTIFTREPNMCPRRNKRVCFEEKVTS

Parental  LGKDWHRPCLRCERCG-KTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDKDPEVKDQP
          LGKDWH.PCLRCERCG.KTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDKDPEVKDQP
Retrocopy LGKDWHWPCLRCERCG<KTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDKDPEVKDQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_481 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_481 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001631	1 retrocopy	retro_meug_93,
Macropus eugenii	ENSMEUG00000010504	1 retrocopy	retro_meug_481 ,
Pteropus vampyrus	ENSPVAG00000014236	1 retrocopy	retro_pvam_878,
Rattus norvegicus	ENSRNOG00000005041	2 retrocopies	retro_rnor_141, retro_rnor_2541,