RetrogeneDB ID: retro_meug_546

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold134546:5709..6206(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GTF2E2
• Ensembl ID: ENSMEUG00000010541
• Aliases: None
• Description: general transcription factor IIE, polypeptide 2, beta 34kDa [Source:HGNC Symbol;Acc:4651]

Sequence

>retro_meug_546
GTCAACAACCCCAAAATGGAAGTAGTAGATGGGAAGTACACCTTCAAGCCCAAGTACAGCCTTAAAGATAAGAAGGCCTT
GCTTCAGCTCCTAGTCAAGCATGACCAGAGAGGCTTGGGAGGGATCCTCCCAGAAGACATTGAGGAGGGGCTGCCCAATG
CCCAGAAAGCCATCAAGGCCTTAGGGGACCAGATCATCTTTGTCACACCTGACAAAAAGAAGATCCTTTTTTTCAATGAT
AAGAGCTGTCAGTTTACCATGGATGAAGAATCTCAGAAACTTTGGAGGAAGATTACTGTGGATTCTATGCATGAGGAGAA
AATTGAAGAGTATCTGAAGCGACAGGGGATCTCTTCTGTGCAGGAGTCTGGACCAAAGACAGTGGCTCCCATCCAGCGGA
GGAAGAAACTAGTCTCGCAGAAGAAAGGAAGGTTCAAGACCCGCCATGAGCACTTGGCCAGGGTCTTGAAGGATCATCTG
ACCTTGCACCAGGCAAG

Alignment

ORF - retro_meug_546 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 56.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VNNPKIEVVDGKYTFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKAIKALGDQIIFVTR
          VNNPK.EVVDGKYTFKPKY.LKDKKALL.LL.KHDQRGLGGIL.EDIEEGLPNAQKAIKALGDQIIFVT.
Retrocopy VNNPKMEVVDGKYTFKPKYSLKDKKALLQLLVKHDQRGLGGILPEDIEEGLPNAQKAIKALGDQIIFVT-

Parental  PDKKKILFYNDKNCQFTVDEEFPNLWRNITMDPMDEEKIEEYLK-QIISTMQKSVLKKV----RRKKPTA
          PDKKKILF.NDK.CQFT.DEE...LWR.IT.D.M.EEKIEEYLK.Q.IS..Q.S..K.V....RRKK...
Retrocopy PDKKKILFFNDKSCQFTMDEESQKLWRKITVDSMHEEKIEEYLKRQGISSVQESGPKTVAPIQRRKKLVS

Parental  QRQ-RPQNLNKLLTGVSK-GCSDIALGK
          Q...R.......L..V.K.G.SD.A.GK
Retrocopy QKKGRFKTRHEHLARVLK<GSSDLAPGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_546 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_546 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000005031	1 retrocopy	retro_dnov_2321,
Macropus eugenii	ENSMEUG00000010541	1 retrocopy	retro_meug_546 ,
Myotis lucifugus	ENSMLUG00000007814	1 retrocopy	retro_mluc_2029,
Sorex araneus	ENSSARG00000007758	2 retrocopies	retro_sara_376, retro_sara_569,
Sus scrofa	ENSSSCG00000015845	1 retrocopy	retro_sscr_878,
Tarsius syrichta	ENSTSYG00000013143	1 retrocopy	retro_tsyr_2074,
Tursiops truncatus	ENSTTRG00000012464	1 retrocopy	retro_ttru_859,