RetrogeneDB ID: retro_mluc_2029

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429993:1917300..1917945(-)
• Located in intron of: ENSMLUG00000029166

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GTF2E2
• Ensembl ID: ENSMLUG00000007814
• Aliases: None
• Description: None

Sequence

>retro_mluc_2029
ATGGATCCAAGCCTTTTGAGAGAAAGGGAGCTGTTCAAAAAACGAGCTCTTTCCACTCCTGTAGTAGAAAAACGTTCAGT
ATCTTCTGAGTCATCAACTTCATCATCACTGAAGAAAAAGAAGGCAAAACTAGAACATGGAGGGTCATCAGGCTCTAAGC
AAAATTCAGATCATAGCAACCGATCATTTAACTTGAAAGCTCTTTCAGGAAGCTCTGGATATAAGTTTGGCGTTCTTGCT
AAGATAGTGAATTATATGAAAACGCGTCATCAGCGAGGAGATACACATCCTCTAACTTTAGAAGAAATTTTGGCTGAAAC
ACAACATTTAGATATTGGACTCAAGCAGAAACAATGGCTAATGTCTGAGACATTAGTCAGTAATCCCAAAATTGAAGTAA
TAGATGGGAAGTATGCCTTCAAGCCCAAGTACAACTTAAAAGGTAAGAAGGCTCTGCTTAGGCTCTTAGATAAGCATGAC
CAGCGAGGCTTAGGAGGAATTCTTCTAGAAGACATAGAGGAAGGACTGCCCAATTCCCAGAAAGCTGTCAAGGCTTTAGG
GGACCAGATATTATTTGTAAATCGTCCTGATAAGAAGAAAATTCTTTTCTTCAATGATAAAAGCTGTCAGTTTTCTGTGG
ACGAA

Alignment

ORF - retro_mluc_2029 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.21 %
• Parental protein coverage: 73.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDPSLLRERELFKKRALSTPVVEKRSVSSESSTSSSSKKKKAKLEHGGSSGSKQNSDHSNGSFNLKALSG
          MDPSLLRERELFKKRALSTPVVEKRSVSSESSTSSS.KKKKAKLEHGGSSGSKQNSDHSN.SFNLKALSG
Retrocopy MDPSLLRERELFKKRALSTPVVEKRSVSSESSTSSSLKKKKAKLEHGGSSGSKQNSDHSNRSFNLKALSG

Parental  SSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVIDGKYAF
          SSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEIL.ETQHLDIGLKQKQWLMSE.LV.NPKIEVIDGKYAF
Retrocopy SSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILAETQHLDIGLKQKQWLMSETLVSNPKIEVIDGKYAF

Parental  KPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQ
          KPKYNLK.KKALLRLLDKHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQ
Retrocopy KPKYNLKGKKALLRLLDKHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQ

Parental  FSVDE
          FSVDE
Retrocopy FSVDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2029 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000005031	1 retrocopy	retro_dnov_2321,
Macropus eugenii	ENSMEUG00000010541	1 retrocopy	retro_meug_546,
Myotis lucifugus	ENSMLUG00000007814	1 retrocopy	retro_mluc_2029 ,
Sorex araneus	ENSSARG00000007758	2 retrocopies	retro_sara_376, retro_sara_569,
Sus scrofa	ENSSSCG00000015845	1 retrocopy	retro_sscr_878,
Tarsius syrichta	ENSTSYG00000013143	1 retrocopy	retro_tsyr_2074,
Tursiops truncatus	ENSTTRG00000012464	1 retrocopy	retro_ttru_859,