RetrogeneDB ID: retro_meug_656

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold15273:14542..14814(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LYRM4
• Ensembl ID: ENSMEUG00000005958
• Aliases: None
• Description: LYR motif containing 4 [Source:HGNC Symbol;Acc:21365]

Sequence

>retro_meug_656
ATGGCAGCCTCCAGTAGAGCACAAGTGGTAGATCTGTACCAGGTGATGCTGAGAGAGAGTGGTAAGTTCACCTCCTACAA
CTACAGAACTTATGCCATTAGAAGGATAAGAGAAGCCTTCAGAGAAAATAAGAATGTAAGGAATTCTGCACAAATACAAG
TACTAGTGAATAAAGCTAAAGGAACCTAGAAATAATTCGGTGACAGAACCACCTTAGTGAAATGTACTCAGGTGATGAGC
TTGTTATTGAGAATCTGAAGAACTGTAGGACC

Alignment

ORF - retro_meug_656 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.96 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAASSRAQVLDLYRVMLRESGKFTSYNYRTYAIRRIREAFRENKNVKDSAQIQMLVNKAK-RNLEIIRRQ
          MAASSRAQV.DLY.VMLRESGKFTSYNYRTYAIRRIREAFRENKNV..SAQIQ.LVNKAK.RNLEIIR.Q
Retrocopy MAASSRAQVVDLYQVMLRESGKFTSYNYRTYAIRRIREAFRENKNVRNSAQIQVLVNKAK<RNLEIIR*Q

Parental  THLSEMYSADKLVIENLKKPRT
          .HLSEMYS.D.LVIENLK..RT
Retrocopy NHLSEMYSGDELVIENLKNCRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_656 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_656 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031432	1 retrocopy	retro_btau_783,
Callithrix jacchus	ENSCJAG00000021370	1 retrocopy	retro_cjac_1371,
Homo sapiens	ENSG00000214113	1 retrocopy	retro_hsap_194,
Macropus eugenii	ENSMEUG00000005958	1 retrocopy	retro_meug_656 ,
Myotis lucifugus	ENSMLUG00000028065	1 retrocopy	retro_mluc_394,
Mustela putorius furo	ENSMPUG00000000532	1 retrocopy	retro_mputfur_1459,
Mus musculus	ENSMUSG00000046573	1 retrocopy	retro_mmus_2374,
Nomascus leucogenys	ENSNLEG00000011472	1 retrocopy	retro_nleu_1002,
Rattus norvegicus	ENSRNOG00000047970	2 retrocopies	retro_rnor_1862, retro_rnor_2052,
Tursiops truncatus	ENSTTRG00000007073	1 retrocopy	retro_ttru_552,