RetrogeneDB ID: | retro_mmus_2374 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:88043803..88044035(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081530 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lyrm4 | ||
Ensembl ID: | ENSMUSG00000046573 | ||
Aliases: | Lyrm4, BC034664, Gm903 | ||
Description: | LYR motif containing 4 [Source:MGI Symbol;Acc:MGI:2683538] |
Percent Identity: | 60. % |
Parental protein coverage: | 85.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YRAMMRESK-HFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK-RDLEIIRRQVHIGQLYSTDK |
Y.AM.RE.....SA...R..AV....DAF.ENKNVK.PVEIQ.LVNKAK.RDLEII....H...LY.TDK | |
Retrocopy | YWAMPRENR<SLSAHDNRIHAVMKVEDAF*ENKNVKAPVEIQILVNKAK<RDLEIIHPLAHTVYLYWTDK |
Parental | LIIENQEKPR |
LI...QEK.R | |
Retrocopy | LIPDDQEKQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 15 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .77 RPM |
SRP007412_heart | 0 .00 RPM | 8 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .30 RPM |
SRP007412_liver | 0 .00 RPM | 5 .95 RPM |
SRP007412_testis | 0 .00 RPM | 5 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031432 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021370 | 1 retrocopy | |
Homo sapiens | ENSG00000214113 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005958 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000028065 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000046573 | 1 retrocopy |
retro_mmus_2374 ,
|
Nomascus leucogenys | ENSNLEG00000011472 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047970 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000007073 | 1 retrocopy |