RetrogeneDB ID: | retro_meug_812 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold19395:19186..19597(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TK2 | ||
| Ensembl ID: | ENSMEUG00000000331 | ||
| Aliases: | None | ||
| Description: | thymidine kinase 2, mitochondrial [Source:HGNC Symbol;Acc:11831] |
Retrocopy-Parental alignment summary:
>retro_meug_812
ATCTGTATAGAAGGTAATATCGCCAGTGGGAAAACGACTTGCCTGGAGTACTTTTCTAAAATGACTGACACTGAGGTTTT
GCCAGAGCCCGTATCTAAATGGAGAAATGTCCATGGCCACAACCCTCTGCGCTTGATGTATCAAGATCCCTCAAGATGGG
GAATGACCTTTCAGACTTACGTGCAGCTTGCCATGCTGGACCAGCATACCAAGCCTCCGATTTTACCAGTGCGAATGATG
GAGAAGTCAATTCACAGTGCTAAATGTATTTTTGTAGAAAACTTGTATAAAAGTGGCAAGATGCCTGAGGTGGATTATGT
GATCTTAACTGAATGGTTTGACTGGATTGTGAAGAACATCAATGTTTCAGCTGAGCTCATAGTTTATCTCCGGACCTCTC
CTCGGACTTGT
ORF - retro_meug_812 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 91.24 % |
| Parental protein coverage: | 64.02 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ICIEGNIASGKTTCLEYFSKTTDIEVLPEPVSKWRNVHGHNPLGLMYQDASRWGMTFQTYVQLTMLDQHT |
| ICIEGNIASGKTTCLEYFSK.TD.EVLPEPVSKWRNVHGHNPL.LMYQD.SRWGMTFQTYVQL.MLDQHT | |
| Retrocopy | ICIEGNIASGKTTCLEYFSKMTDTEVLPEPVSKWRNVHGHNPLRLMYQDPSRWGMTFQTYVQLAMLDQHT |
| Parental | KPLVLPVRMMERSIHSAKYIFVENLYKSGKMPEVDYVILTEWFDWIVKNINVSVDLIVYLRTSPETC |
| KP..LPVRMME.SIHSAK.IFVENLYKSGKMPEVDYVILTEWFDWIVKNINVS..LIVYLRTSP.TC | |
| Retrocopy | KPPILPVRMMEKSIHSAKCIFVENLYKSGKMPEVDYVILTEWFDWIVKNINVSAELIVYLRTSPRTC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_812 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_812 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000000331 | 1 retrocopy |
retro_meug_812 ,
|
| Ictidomys tridecemlineatus | ENSSTOG00000029024 | 1 retrocopy |