RetrogeneDB ID: retro_meug_98

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_2225:30357..30747(+)
• Located in intron of: ENSMEUG00000005677

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ELP6
• Ensembl ID: ENSMEUG00000005529
• Aliases: None
• Description: elongator acetyltransferase complex subunit 6 [Source:HGNC Symbol;Acc:25976]

Sequence

>retro_meug_98
CTGACTCCCTCAGGTGTTGGTGATACTGCTTCATGGAAGTTCCCAGTGCTTTTGGTGGGTGACCTGAGTGTCCTGCTCAG
TTTGGGTAATCAAGCAGTGGCTATTCCGGACTTCATTCAATCCTGTAGGGTCACTGTCTGCTATCAGTTGAAGGGAAATG
TGGTAGCTTTGGTACATGACAGTGACAAGACAGAAGATGAGAATGTTGTACTGATGAATGCTCTTGGTCACCAAAGCAGC
TTGATCCTCTGGGCTGGACTGGTAACTGGATTCTGCAAGGAAGTTCATGGGCAGTTGAAAATCCTGTGGAGGAGATTGCA
GCGGCTAAAGGTTGAACAGACTCAGAGTCTCATTTATCAATACAAAATACATGACAAGAGTGTGACCTTC

Alignment

ORF - retro_meug_98 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.09 %
• Parental protein coverage: 53.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTPSGDGDAASWKLPVLLVDDLSVLLSLGVQAVAVLDFIQSCRVTVCCQLKGNVVALVHDSDRTEDEENA
          LTPSG.GD.ASWK.PVLLV.DLSVLLSLG.QAVA..DFIQSCRVTVC.QLKGNVVALVHDSD.TED.EN.
Retrocopy LTPSGVGDTASWKFPVLLVGDLSVLLSLGNQAVAIPDFIQSCRVTVCYQLKGNVVALVHDSDKTED-ENV

Parental  VLMNALGHQSSLILRAEGLVTGFCKDVHGQLKILWRGLQQPKVGQTRSLVYQYKIQDKSVTF
          VLMNALGHQSSLIL.A.GLVTGFCK.VHGQLKILWR.LQ..KV.QT.SL.YQYKI.DKSVTF
Retrocopy VLMNALGHQSSLILWA-GLVTGFCKEVHGQLKILWRRLQRLKVEQTQSLIYQYKIHDKSVTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_98 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_98 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005529	1 retrocopy	retro_meug_98 ,
Myotis lucifugus	ENSMLUG00000002167	1 retrocopy	retro_mluc_2505,