RetrogeneDB ID: | retro_meug_98 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | GeneScaffold_2225:30357..30747(+) | ||
| Located in intron of: | ENSMEUG00000005677 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ELP6 | ||
| Ensembl ID: | ENSMEUG00000005529 | ||
| Aliases: | None | ||
| Description: | elongator acetyltransferase complex subunit 6 [Source:HGNC Symbol;Acc:25976] |
Retrocopy-Parental alignment summary:
>retro_meug_98
CTGACTCCCTCAGGTGTTGGTGATACTGCTTCATGGAAGTTCCCAGTGCTTTTGGTGGGTGACCTGAGTGTCCTGCTCAG
TTTGGGTAATCAAGCAGTGGCTATTCCGGACTTCATTCAATCCTGTAGGGTCACTGTCTGCTATCAGTTGAAGGGAAATG
TGGTAGCTTTGGTACATGACAGTGACAAGACAGAAGATGAGAATGTTGTACTGATGAATGCTCTTGGTCACCAAAGCAGC
TTGATCCTCTGGGCTGGACTGGTAACTGGATTCTGCAAGGAAGTTCATGGGCAGTTGAAAATCCTGTGGAGGAGATTGCA
GCGGCTAAAGGTTGAACAGACTCAGAGTCTCATTTATCAATACAAAATACATGACAAGAGTGTGACCTTC
ORF - retro_meug_98 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.09 % |
| Parental protein coverage: | 53.23 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LTPSGDGDAASWKLPVLLVDDLSVLLSLGVQAVAVLDFIQSCRVTVCCQLKGNVVALVHDSDRTEDEENA |
| LTPSG.GD.ASWK.PVLLV.DLSVLLSLG.QAVA..DFIQSCRVTVC.QLKGNVVALVHDSD.TED.EN. | |
| Retrocopy | LTPSGVGDTASWKFPVLLVGDLSVLLSLGNQAVAIPDFIQSCRVTVCYQLKGNVVALVHDSDKTED-ENV |
| Parental | VLMNALGHQSSLILRAEGLVTGFCKDVHGQLKILWRGLQQPKVGQTRSLVYQYKIQDKSVTF |
| VLMNALGHQSSLIL.A.GLVTGFCK.VHGQLKILWR.LQ..KV.QT.SL.YQYKI.DKSVTF | |
| Retrocopy | VLMNALGHQSSLILWA-GLVTGFCKEVHGQLKILWRRLQRLKVEQTQSLIYQYKIHDKSVTF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_98 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_98 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000005529 | 1 retrocopy |
retro_meug_98 ,
|
| Myotis lucifugus | ENSMLUG00000002167 | 1 retrocopy |