RetrogeneDB ID: retro_mluc_2505

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430626:62244..63039(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C3ORF75
• Ensembl ID: ENSMLUG00000002167
• Aliases: None
• Description: None

Sequence

>retro_mluc_2505
ATGTTCCCGGAGCTCAATGACCTCCTCAATGCCTCCCCGGACCGGGCGGAGCCGGGGAAACTGACTCTACTCTGTGATGC
CGAGACCGATGGCAGTTTCCTTGTGCACCACTTTCTCTCCTTCTACCTCAAAGCTAATTGTAAGGTGTGTTTTGTGGCCC
TCGGTCAGTCCTTCAGTCACTACAACATTGTGGGACAGAAGCTGGGTGTCAGCCTGACCACGGCACGGGAGCGCAGGCAG
CTGGTCTTCCTCGAGGGTCTCAGGTCAGCGGTGGACGTCTTCTTCCGGGCCGAGGGCGAGGCACATCCCCTGCAGTTCCT
CAGGGAGGCCAAGGCCGCCAGCCTGCAGCCGCTGTATGAGTTCGTGCGGGAGGCCCTGAAGCCCGTGGATCAGAGGGAGG
CTGCCTGGAAGAGCCCGGTGCTGCTGGTGGACAACCTCAGTGTGCTGCTGAGCCTGGGCGTGGGGGCGGTGGCCGTGCCG
GACTTCGTCCACTACTGCAGGGCCTGCGTGTGCTGCCGGCTGCAGGGAAACATAGTGGCCCTTGTGCACGACAGTGGGGA
CGCCGAGGACGAGGAGAACGACGTCCCGCTGAATGGCCTCAGTCACCAGAGCCACCTGGTCCTGCGGGCCGAGGGCCTGG
CCACCGGCTTCTGCAGGGACGTGCACGGGTAGCTGAGGGTCCTGTGGAGGACGCCGTCGCCGCCCGCCCGGCGGGGTCGG
AGCCTCACTTTCCAGTACAAGATCCAGGACAAGAGCGTGTCCTTTTTCGCCAAAGGAATGTCTCCTGCGGTTCTG

Alignment

ORF - retro_mluc_2505 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.47 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFPELNDLLNASPDRAEPGKLTLLCDAETDGSFLVHHFLSFYLKADCKVCFVALVQSFSHYNIVGQKLGV
          MFPELNDLLNASPDRAEPGKLTLLCDAETDGSFLVHHFLSFYLKA.CKVCFVAL.QSFSHYNIVGQKLGV
Retrocopy MFPELNDLLNASPDRAEPGKLTLLCDAETDGSFLVHHFLSFYLKANCKVCFVALGQSFSHYNIVGQKLGV

Parental  SLTTARERGQLVFLEGLRSAVDVFFRAEGEAHPLHFLREAKAASLQPLYEFVREALEPVDQREAAWKRPV
          SLTTARER.QLVFLEGLRSAVDVFFRAEGEAHPL.FLREAKAASLQPLYEFVREAL.PVDQREAAWK.PV
Retrocopy SLTTARERRQLVFLEGLRSAVDVFFRAEGEAHPLQFLREAKAASLQPLYEFVREALKPVDQREAAWKSPV

Parental  LLVDDLSVLLSLGVGAVAVLDFVHYCRACVCCRLQGNIVALVHDSGDAEDEESDVLLNGLSHQSHLVLRA
          LLVD.LSVLLSLGVGAVAV.DFVHYCRACVCCRLQGNIVALVHDSGDAEDEE.DV.LNGLSHQSHLVLRA
Retrocopy LLVDNLSVLLSLGVGAVAVPDFVHYCRACVCCRLQGNIVALVHDSGDAEDEENDVPLNGLSHQSHLVLRA

Parental  EGLATGFCRDVHGQLRVLWRTPSPPAQRGRSLTFQYKIQDKSVSFFAKGMSPAVL
          EGLATGFCRDVHG.LRVLWRTPSPPA.RGRSLTFQYKIQDKSVSFFAKGMSPAVL
Retrocopy EGLATGFCRDVHG*LRVLWRTPSPPARRGRSLTFQYKIQDKSVSFFAKGMSPAVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2505 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005529	1 retrocopy	retro_meug_98,
Myotis lucifugus	ENSMLUG00000002167	1 retrocopy	retro_mluc_2505 ,