RetrogeneDB ID: retro_mluc_1067

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429791:2366143..2366536(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOB1B
• Ensembl ID: ENSMLUG00000005838
• Aliases: None
• Description: None

Sequence

>retro_mluc_1067
AAAAAATGTCCAGTCATGTTTGCGTGTGCAAAATATGAATATTATTTGGCAGATGATACTAATATTTAAAAGCCAATCAA
ATATCTATCTCCATGACACAGCAACTATTTGATATCTTTGGTTCTGGATATACTTGAGGATGAAACTTATTTTATTCTAA
AACTGGTGTCTTATTTCCCAGAAAACTTTATGTCTGTGGCAAAGACTTCCAAAGTGTCTGTTCAGGGCTAATATCCATAT
TTAATAACTGTACTTTGATTTTGTGATGTAAGAGGAGATTCACCTCAACATTTTCTTCAGCATTTTTTTACCCCTCCAGA
GTGCAATCTGACTGATAGACATGAGTTGACACCTCTTCAGGAATTAATTGAGAAGCTCCGATCAAAACACAGG

Alignment

ORF - retro_mluc_1067 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.9 %
• Parental protein coverage: 62.79 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDET-LFPSKIGVPFPKNFMSVAKT
          ..CPVM.A..KYEY..AD.TNI.KPIK...P....YL...V.D.L.DET.LF.SK.GV.FP.......K.
Retrocopy KKCPVMFACAKYEYYLADDTNI*KPIKYLSP*HSNYLISLVLDILEDET<LFYSKTGVLFPRKLYVCGKD

Parental  -ILKRLFRVYAHIYHQHFDPVIQLQEEAHLNTSF-KHFIFFVQEFNLVDRRELAPLQELIEKLTSKDR
          ...K.LFR...HI....FD.V....EE.HLN..F..HF.F...E.NL.DR.EL.PLQELIEKL.SK.R
Retrocopy <LPKCLFRANIHI**LYFDFV--M*EEIHLNIFF<QHF-FTPPECNLTDRHELTPLQELIEKLRSKHR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1067 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012418	3 retrocopies	retro_chof_1124, retro_chof_1337, retro_chof_660,
Macropus eugenii	ENSMEUG00000014210	1 retrocopy	retro_meug_384,
Microcebus murinus	ENSMICG00000006469	2 retrocopies	retro_mmur_1622, retro_mmur_653,
Myotis lucifugus	ENSMLUG00000005838	1 retrocopy	retro_mluc_1067 ,
Myotis lucifugus	ENSMLUG00000006539	1 retrocopy	retro_mluc_1044,
Ochotona princeps	ENSOPRG00000009133	1 retrocopy	retro_opri_386,
Sus scrofa	ENSSSCG00000008941	2 retrocopies	retro_sscr_377, retro_sscr_586,
Vicugna pacos	ENSVPAG00000011892	1 retrocopy	retro_vpac_35,