RetrogeneDB ID: | retro_mluc_1129 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429797:6894917..6895416(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPIA | ||
Ensembl ID: | ENSMLUG00000005384 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.36 % |
Parental protein coverage: | 54.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | VENHVRNNQVLGIGSGSTIVHAVQR-IAERVKQENLNLVCVPTSFQARQLILQYGLTLSDLDRHPEIDLA |
.E.H.RNNQVLGIGSGS...HA....IA.RVKQEN.N..CVPTSFQA.QL.LQ.GL.LS.LDRHPEI.L. | |
Retrocopy | MESHARNNQVLGIGSGSASAHAAHE<IAQRVKQENQNRLCVPTSFQAHQLALQ*GLQLSHLDRHPEIHLT |
Parental | IDGADEVDADLNLIKGGGGCLTQEKIVAGYAS-RFIVIAD-FRKDSKNLGDQWHKGIPIEVIPMAYVPVS |
.DGADEV.ADL.LI.GGGG.L.QE..V.G.AS....VIAD..R..SKNLG.Q.HKGIP.EVI.MAYVPVS | |
Retrocopy | LDGADEVGADLHLITGGGGHLAQEENVTGCAS<PLVVIAD<LREVSKNLGGQRHKGIPREVIAMAYVPVS |
Parental | RAVTQKFG-GVVELRMAV-NKAGPVVTDNGNFI |
RA.TQKFG.G.VELR.A..NKAGP.V.D..NFI | |
Retrocopy | RAGTQKFG<GMVELRRAA<NKAGPLVRDSRNFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002866 | 1 retrocopy | |
Equus caballus | ENSECAG00000011754 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008256 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006462 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005384 | 1 retrocopy |
retro_mluc_1129 ,
|
Monodelphis domestica | ENSMODG00000009649 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006840 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000034178 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006406 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000000876 | 2 retrocopies |