RetrogeneDB ID: | retro_ttru_1175 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_106406:95383..95872(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPIA | ||
Ensembl ID: | ENSTTRG00000000876 | ||
Aliases: | None | ||
Description: | ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:10297] |
Percent Identity: | 87.73 % |
Parental protein coverage: | 52.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FGTGSTSTAGGDANSVCPAPSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQE |
FG.GSTST.GGDANSV..APSTMSKAEEA.KLAG.AAVENH.RNNQVLGIGSGSTIVHAVQ.IAERVKQE | |
Retrocopy | FGAGSTSTGGGDANSVRLAPSTMSKAEEARKLAGCAAVENHLRNNQVLGIGSGSTIVHAVQQIAERVKQE |
Parental | NLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGNASRF |
NLNLVCIPTSF.A.QLILQYG.TL.DLDR.PEIDLAIDGAD.VDAD.NL.KGGGGCLTQEKIVAGNAS.F | |
Retrocopy | NLNLVCIPTSFHAHQLILQYG*TLGDLDRRPEIDLAIDGADAVDADFNLVKGGGGCLTQEKIVAGNASCF |
Parental | IVIADFRKDSKNLGDQWHKGIPI |
IVIA.FRKDSKNLGDQWHK.IP. | |
Retrocopy | IVIASFRKDSKNLGDQWHKVIPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002866 | 1 retrocopy | |
Equus caballus | ENSECAG00000011754 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008256 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006462 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005384 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009649 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006840 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000034178 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006406 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000000876 | 2 retrocopies |
retro_ttru_1175 , retro_ttru_799,
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