RetrogeneDB ID: retro_mluc_1158

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429800:3118009..3118401(-)
• Located in intron of: ENSMLUG00000003952

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COMMD8
• Ensembl ID: ENSMLUG00000011376
• Aliases: None
• Description: COMM domain containing 8 [Source:HGNC Symbol;Acc:26036]

Sequence

>retro_mluc_1158
ATATATGTTCTGGAATATATTACCAAATTTTTCAAAGCTGTAGTTGGTAAAAATGTATCTGATGAGGAGTTATCTCAGCA
ATTGAATCAGTCAAATTCATTTAATCAAGATGCTATCATGAAATGCTTGAAAAATAGAAAAGATGAAATTAATCAGGCTG
GTTTAGAAGAAATAGTTGATATTTCCTCTGCATAGTTGCAGAATCTTGATTGGCACTTAAAGCTTACACTTTGTTGTGAC
AAGATTGCTACATTACAAACTCAACTTTTAGACCTTCACTTAAACATAAAATAAAATGAAGTCACACTGTATTCTGTTGA
AATAAATAAAGAAGAGCTGCGGACTCTAATAAATCCTTGGAAGCAGCTAATAAGGTCATCCTGCAGTTGAAA

Alignment

ORF - retro_mluc_1158 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.92 %
• Parental protein coverage: 72.13 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MHVLEDITKFFKAVVGKKLSDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKQTLLNEIVDISSAQLQDFD
          ..VLE.ITKFFKAVVGK..SDEE.SQQLNQ.NS..Q.AIMKCLK.RKDEI.Q..L.EIVDISSA.LQ..D
Retrocopy IYVLEYITKFFKAVVGKNVSDEELSQQLNQSNSFNQDAIMKCLKNRKDEINQAGLEEIVDISSA*LQNLD

Parental  WQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSIEMSKEELQNLIN-TLEAANKVIRQFK
          W.LKL.L..DKIATLQ..LL.LHL..K.N.EV..YS.E..KEEL..LIN..LEAANKVI.Q.K
Retrocopy WHLKLTLCCDKIATLQTQLLDLHLNIK*N-EVTLYSVEINKEELRTLIN<SLEAANKVILQLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1158 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001348	1 retrocopy	retro_btau_579,
Echinops telfairi	ENSETEG00000020257	3 retrocopies	retro_etel_1416, retro_etel_182, retro_etel_210,
Felis catus	ENSFCAG00000023811	1 retrocopy	retro_fcat_421,
Myotis lucifugus	ENSMLUG00000011376	1 retrocopy	retro_mluc_1158 ,
Macaca mulatta	ENSMMUG00000021777	1 retrocopy	retro_mmul_434,
Ochotona princeps	ENSOPRG00000000739	1 retrocopy	retro_opri_805,
Ictidomys tridecemlineatus	ENSSTOG00000001221	1 retrocopy	retro_itri_1566,