RetrogeneDB ID: retro_mluc_1174

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429803:4583578..4584194(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HNMT
• Ensembl ID: ENSMLUG00000015156
• Aliases: None
• Description: None

Sequence

>retro_mluc_1174
ATGGCATCTTCTATGAGGACTTGTTTTCTAATCATAACAGTTATGTCGAATCTTTTCAGAGGTTTCTCAGTAATTCCATG
AAACACCAGTGCATGAAGGAATTCTTGGACAACAAGCTGCCAGGCACAATAGCAAGGGTTGGAGACAAAAAATCAGAAAT
TAAGATTCTAAGCATTGGCAGAGGTGTAGGTGAAATTGATCTTCAAATTTTCTATAAGGTGCAGCCTCAATACCAAGGAA
TTCATATCAAAAATGAAGTTGTTGAACCAAGTGTTGAGCAAATTTCAAGTACAAAGAGTTTGTAGCTAAGTCATCAAACC
TCGAGAACATAAAGTTTGCTTGGCATGAGGAGACATCATCTGAATCTCAAAATAGAATAATGGAGAAAAAAGAACTTCAG
AAGTGAGACTTTGTTTATATGATTCAGATGCTGTATTATATAAAAGGCATCCCAGCTACTCTGAAATTTTTCCATAGTCT
CTTAGCTACCAATGCAAAAATTTTTATTATTCTTGTGTCAGGAAGCAGTGCCTGGGACAAGCTATGGAAAAAGTACAGAT
TCCTCTTACCCTGGGATGACCTCTGACAGTATGTCACATCGACTGATCTCACTCAG

Alignment

ORF - retro_mluc_1174 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.92 %
• Parental protein coverage: 70.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MASSMRS-LFSDHSRYVESFRRFLNNSTEHQCMQEFLDKKLPGIIARIGDKKSEIKILSIGGGAGEIDLQ
          MASSMR..LFS.H..YVESF.RFL.NS..HQCM.EFLD.KLPG.IAR.GDKKSEIKILSIG.G.GEIDLQ
Retrocopy MASSMRT<LFSNHNSYVESFQRFLSNSMKHQCMKEFLDNKLPGTIARVGDKKSEIKILSIGRGVGEIDLQ

Parental  ILSKVQDQFPGVHINNEVVEPSAEQIA-KYKEFVAKSSNLENIKFAWHKETSSEYENRVMENKELQKWDF
          I..KVQ.Q..G.HI.NEVVEPS.EQI..KYKEFVAKSSNLENIKFAWH.ETSSE..NR.ME.KELQK.DF
Retrocopy IFYKVQPQYQGIHIKNEVVEPSVEQIS<KYKEFVAKSSNLENIKFAWHEETSSESQNRIMEKKELQK*DF

Parental  IHMIQMLYYVKDIPATLKFFHSLLAPSAKILIVLVSGTSAWDKLWRKYGSRLPRDDLCQYITSTDVTQ
          ..MIQMLYY.K.IPATLKFFHSLLA..AKI.I.LVSG.SAWDKLW.KY...LP.DDL.QY.TSTD.TQ
Retrocopy VYMIQMLYYIKGIPATLKFFHSLLATNAKIFIILVSGSSAWDKLWKKYRFLLPWDDL*QYVTSTDLTQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1174 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015340	1 retrocopy	retro_dnov_1969,
Myotis lucifugus	ENSMLUG00000015156	2 retrocopies	retro_mluc_1174 , retro_mluc_1417,
Monodelphis domestica	ENSMODG00000001168	1 retrocopy	retro_mdom_932,
Tursiops truncatus	ENSTTRG00000012879	1 retrocopy	retro_ttru_1560,