RetrogeneDB ID: retro_mluc_1417

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429834:3185358..3186058(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HNMT
• Ensembl ID: ENSMLUG00000015156
• Aliases: None
• Description: None

Sequence

>retro_mluc_1417
ATGGCCTCTTCCATGAGGAACCTGTTTCCTGATCACAGCAGATATGTGGAATCTTTTCTGAGGTTTCTCAACAATTCCAC
AGAATGCCAGTGCATGCAGGAATTCACAGATAAGAAGCTGCCAGGCAGAATAGCAAGGATCAGAGACAACAAATCAGAAA
TTAAGATTCTAAGCATTGACAGAAGTGAGATGAAATTGACCTTCAAATTCTCTCCAAAGTGCAGGCTCAATACCCAGGAG
TTCATATCAACAATGAAGTTGTTGAACCACGTGCTAAACAAATTGCCAAGTATAAAGAGTTTGAAGCCAAGTCATAAGAC
CACAAGGACATAAAGTTTGCTTGGTATAAGGCAACGTCATCTAAATGTCAAAATAGAATGATGGAAAAAAAGAACTTCAG
AAAAGGGACTTTATTCATATGATTCAGATTCTGTATTATGTAAAGGACATCCCAATTTTCCTGAAATTCTTCCATAGTCT
CTTAGATACCAAGGCTAAGATTCTCATTATTCTTGTGTCAGAAACCAGTATCTGGGACAAACTATGGAAAAAGTACGGAT
CCCGCTTACCCTGGAATGACCTCTGCCAGCATGTCATGTCGACCAGTCTCACTCAGATGCTGGGCAAGTTGGGGATTAAG
TATGAGCGTTATGAACTTCTGACTGTTTCATTGATGACAATGAAAATGGGGACCTGCTTT

Alignment

ORF - retro_mluc_1417 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.31 %
• Parental protein coverage: 78.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MASSMRSLFSDHSRYVESFRRFLNNSTEHQCMQEFLDKKLPGIIARIGDKKSEIKILSIGGGA-GEIDLQ
          MASSMR.LF.DHSRYVESF.RFLNNSTE.QCMQEF.DKKLPG.IARI.D.KSEIKILSI......EIDLQ
Retrocopy MASSMRNLFPDHSRYVESFLRFLNNSTECQCMQEFTDKKLPGRIARIRDNKSEIKILSIDRSE<DEIDLQ

Parental  ILSKVQDQFPGVHINNEVVEPSAEQIAKYKEFVAKSSNLENIKFAWHKETSSEYENRVMENK-ELQKWDF
          ILSKVQ.Q.PGVHINNEVVEP.A.QIAKYKEF.AKS.....IKFAW.K.TSS...NR.ME.K.ELQK.DF
Retrocopy ILSKVQAQYPGVHINNEVVEPRAKQIAKYKEFEAKS*DHKDIKFAWYKATSSKCQNRMMEKK<ELQKRDF

Parental  IHMIQMLYYVKDIPATLKFFHSLLAPSAKILIVLVSGTSAWDKLWRKYGSRLPRDDLCQYITSTDVTQML
          IHMIQ.LYYVKDIP..LKFFHSLL...AKILI.LVS.TS.WDKLW.KYGSRLP..DLCQ...ST..TQML
Retrocopy IHMIQILYYVKDIPIFLKFFHSLLDTKAKILIILVSETSIWDKLWKKYGSRLPWNDLCQHVMSTSLTQML

Parental  DKLEIKYECYDLLS----TMDISDCF
          .KL.IKYE.Y.LL.....TM....CF
Retrocopy GKLGIKYERYELLTVSLMTMKMGTCF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1417 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015340	1 retrocopy	retro_dnov_1969,
Myotis lucifugus	ENSMLUG00000015156	2 retrocopies	retro_mluc_1174, retro_mluc_1417 ,
Monodelphis domestica	ENSMODG00000001168	1 retrocopy	retro_mdom_932,
Tursiops truncatus	ENSTTRG00000012879	1 retrocopy	retro_ttru_1560,