RetrogeneDB ID: retro_mluc_1231

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:5512728..5513516(+)
• Located in intron of: ENSMLUG00000013261

Retrocopy information

• Ensembl ID: ENSMLUG00000026133
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SUCLG1
• Ensembl ID: ENSMLUG00000012370
• Aliases: None
• Description: None

Sequence

>retro_mluc_1231
GTCGGAGGAACCACTCCAGGGAAAGGAGGCAAGGCGCACCTGGGCTTACCGGTCTTTAATACTGTAAAGGAGGCCAAAGC
ACAGACAGGAGCGACAGTTTCTGTCATTTATGTCCCTCCTCCTTTTGTTGCTGCCATTGATGAAGCTGTGGAGGCGAAAT
GCCCTTGGTCGTGTGCATTACTGAAGGTATCCCACAGCAGGACATGGTACGGGTCAAACACAAAATACTGCGCCAGGGAA
AAACAAGGCTGACTGGGCCAAACTGCCCCGGAGTCATCAATCCTGGAGAATGTAAAATTGGTATCATGCCTGGCCATATT
CACAAGAAAGGGAGAATTGGTATTTTGTCCAGATCTGGCACCCTGACTTATGAAGCGGTTCACCAAACAACACAAGTTGG
ACTGGGGCAGTCTTTGTGCATTGGCATTGGAGGTGATCCTTTTAATGGAACAGATTTTATCGACTGCTTGGAAGTCTTTC
TGAATGACCCAGCCACAGAAGGCATCATCCTGATTGGTGAAATTGGTGGTAATGCAGAAGAAAACGCTGCAGAATTTTTG
AAGCAACATAATTCAGGCCCCAAAGCCAAGCCTGTGATGTCCTTCATTGCTGGCTTAACGGCTCCTCCTGGCAGGAGAAT
GGGTCACACAGGCGCCATTATTGCTGGAAGAAAAGGTGGCTCAAAGGAGAAGATCTCTGCCCTTCAGAGCGCAGGGGTTG
TGGTCAGCATGTTGCCTGCACAGCTGGGAAACACCATCTACAAGGAGTTTGAAAAGAGGAAGATGCTA

Alignment

ORF - retro_mluc_1231 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.34 %
• Parental protein coverage: 76.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VGGTTPGKGGKTHLGLPVFNTVKEAKAQTGATASVIYVPPPFAAAAIDEAVEA-EMPLVVCITEGIPQQD
          VGGTTPGKGGK.HLGLPVFNTVKEAKAQTGAT.SVIYVPPPF.AA.IDEAVEA.EMPLVVCITEGIPQQD
Retrocopy VGGTTPGKGGKAHLGLPVFNTVKEAKAQTGATVSVIYVPPPFVAA-IDEAVEA<EMPLVVCITEGIPQQD

Parental  MVRVKHKILRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQT
          MVRVKHKILRQGKTRL.GPNCPGVINPGECKIGIMPGHIHKKGRIGI.SRSGTLTYEAVHQTTQVGLGQ.
Retrocopy MVRVKHKILRQGKTRLTGPNCPGVINPGECKIGIMPGHIHKKGRIGILSRSGTLTYEAVHQTTQVGLGQS

Parental  LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAEYLKQHNSGPKAKPVVSFIAGLTA
          LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAE.LKQHNSGPKAKPV.SFIAGLTA
Retrocopy LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVMSFIAGLTA

Parental  PPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGNTMYKEFEKRKML
          PPGRRMGH.GAIIAG.KGG.KEKISALQSAGVVVSM.PAQLGNT.YKEFEKRKML
Retrocopy PPGRRMGHTGAIIAGRKGGSKEKISALQSAGVVVSMLPAQLGNTIYKEFEKRKML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1231 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000003017	1 retrocopy	retro_cpor_1170,
Myotis lucifugus	ENSMLUG00000012370	1 retrocopy	retro_mluc_1231 ,
Procavia capensis	ENSPCAG00000013405	1 retrocopy	retro_pcap_356,
Pteropus vampyrus	ENSPVAG00000003656	2 retrocopies	retro_pvam_1160, retro_pvam_670,
Drosophila melanogaster	FBgn0004888	1 retrocopy	retro_dmel_47,