RetrogeneDB ID: retro_mluc_1350

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429826:5262259..5263110(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW1
• Ensembl ID: ENSMLUG00000001653
• Aliases: None
• Description: None

Sequence

>retro_mluc_1350
GTAAAGGGTTTTTTGGAGTCGGAGAGGAGTAAGCTGGCTATGTTGACGGGTGTTCTTCTGGCTAGTGGAACGCTTAATGC
ATCCATTCTTCATAGCCTTTATAATGAGAATTTGGTTAAATAAGGGGTTTCAGAAGCTTTTGCTGTAAAGCTCTTTAAAT
CATGGATAAATGAAAAAGACATCGATGCAGTAGCCGCAAGTCTTCGGAAAGTCAGCACGGATAACAGACTGATGGAACTT
TTTCTTGTGAATAAACAAAGCCTTGAACATTTCACAAAGCATTTCGCTGAGGCAGGCTTAAAAGAGCTTTCAGAATATGT
TCGGAATCAGCAAACCATAGGAGCTCATAAAGAACTCCAGAAAGAACGTCAAGAACAGATGTCCCGTGGTGATTCATTTA
AGGATATAATTTTGTATGTCAAGGAGGAGATGAAAAAAACAACAACATCCCAGAACACGTTTGTCATTGGATGAATCTGG
CCCAGTGTAATGAGCACCGTGGACTGGAACAACAAAGAGGAGCTTGTAGCAGAGCAAGCCATCAAGCACTTGATGCAAAA
CAGCCCACTCCTCGCTGCCTTCACTACTCAAGGTCAGGCTGAGCTGACTCTGTTACTGAAGATGCAGGAGTATTGCTATG
ATAACATTCATTTCACGAAAGCCTTCCAGAAAATTGTGGTGCTTTTTTATAAAGCTGCAGTCCCGAGGGAGGAGCCCATT
CTGAAGTGCTATAAAGACGCACATTTTGGAAAGGGGAAAAGTGTCTTCCTTGAATTGAACAAATGAAAAAGTTTGTGGAG
TGGCTCAAAAATGCTGAAGAAGAATCTGAGTCTGAAGCTGAAGAAGGTGAC

Alignment

ORF - retro_mluc_1350 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.9 %
• Parental protein coverage: 66.67 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVASSLRR
          .KGF.ESER.KLAMLTGVLLA.GTLNASIL.SLYNENLVK.GVS.AFAVKLFKSWINEKDI.AVA.SLR.
Retrocopy VKGFLESERSKLAMLTGVLLASGTLNASILHSLYNENLVK*GVSEAFAVKLFKSWINEKDIDAVAASLRK

Parental  VSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKD-IILY
          VS.DNRLMELF..NKQS.EHFTK.F.EAGLKELSEYVRNQQTIGA.KELQKE.QEQMSRGD.FKD.I...
Retrocopy VSTDNRLMELFLVNKQSLEHFTKHFAEAGLKELSEYVRNQQTIGAHKELQKERQEQMSRGDSFKDIILYV

Parental  VKE-EMKKNNIPEPV-VIGLIWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFTTQGQSELTLLLK
          ..E...K.NNIPE.V.VIG.IW.SVMSTV.WN.KEELVAEQAIKHL..Q.SPLLAAFTTQGQ.ELTLLLK
Retrocopy KEE<DEKNNNIPEHV>VIG*IWPSVMSTVDWNNKEELVAEQAIKHLM-QNSPLLAAFTTQGQAELTLLLK

Parental  IQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVA-KGKSVF--LEQMKKFVEWLKNAEEES
          .QEYCYDNIHF.KAFQKIVVLFYKA.V..EEPILK.YKDAH...KG.......EQMKKFVEWLKNAEEES
Retrocopy MQEYCYDNIHFTKAFQKIVVLFYKAAVPREEPILKCYKDAHFG<KGEKCLP*IEQMKKFVEWLKNAEEES

Parental  ESEAEEGD
          ESEAEEGD
Retrocopy ESEAEEGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1350 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003543	8 retrocopies	retro_chof_1519, retro_chof_2060, retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
Myotis lucifugus	ENSMLUG00000001653	2 retrocopies	retro_mluc_1350 , retro_mluc_2561,
Pteropus vampyrus	ENSPVAG00000008111	1 retrocopy	retro_pvam_773,