RetrogeneDB ID: retro_mluc_2561

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430948:79870..80939(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW1
• Ensembl ID: ENSMLUG00000001653
• Aliases: None
• Description: None

Sequence

>retro_mluc_2561
CGCCGATATGCAGAAACACTCTTTGACATTCTGGTGGCCAGGGGAATGCTGGCCCCAGGTGGTACAACGGCAGAAGACAT
GATGCGCACAGATGTCTGTGTGTTTGCAGCACAAGAAGACCTAGAGACCATGTAAGCATTTGCTCAGGTTTTTAACAAGT
TAATCAGGCGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTGAAAAAGCTGCTGCTGTTCTTAAAGCGTTTTTCG
GAGTCGGAGAGGAACAGGCTGGCTATGTTGACTGGTGTTCTCCTGGCTAATGGAACACTTAATGCACCCATTCTTAATAG
CCTTTATAATGAGAATTTGGTTAAAGAAGGGGTTTCAGCAGCTTTTGCTGTAAAGCTCTGTAAATCATGGATAAATGAAA
AAGATATCAGTGCAGTAGCTTCAAGTCTTCAGAAAGTCAGCATGGATAACAAACTGATGGGACATTCTCCTGACAATAAA
CAAAGCGTTGAACACTTCACAAAGTATTTCACTGAGGCAGGCTTAAAAGAGCCTTCAGAATATGTTCAGAATCAGCAAAC
CATAGGAGTTCGTGAAGAACTCCAGAAAGAACGTCAAGAACAGATGTCCCCGTGGTGATCCATTTAAGGATATAATTTTG
TATGTCAAGGAGATGAAAAAAACAAAACAAAAACCCAACATTCCAGAACTCGTTGTCATTGGATGAATCTGGTCCAGTGT
AATGAGCACCGTGGAATGGAACAAAAAAGAGCTTGTAGCAGAGCAAACCATCAAGTACATGAAGCAATACAGCCCTCTCC
TCGCTGCCTTTACTACTCAAGGTCAGACTGAGCTGTTACTGAAGATGCAGGAGTATTGCTATGATAACATTTATTTCATG
AAAGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAGCTGAAGTCCTGAGTGAGGAGCCCATTCTGAAGTGGTACAAAGA
TGCACATGTTGCAAAGGGGAAAAGTGTCTTCCTTGAGCAAAGGAAAAAGTTTGTGGAGTGTCTCAAAAATGCTGAAGAAG
AATCTGAGTCTGAAGCTGAAGAAGGTGAT

Alignment

ORF - retro_mluc_2561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.26 %
• Parental protein coverage: 84.4 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RRYAETLFDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVK
          RRYAETLFDILVA.GMLAPGGT.A.DMMRTDVCVFAAQEDLETM.AFAQVFNKLIRRYKYLEKGFEDEVK
Retrocopy RRYAETLFDILVARGMLAPGGTTAEDMMRTDVCVFAAQEDLETM*AFAQVFNKLIRRYKYLEKGFEDEVK

Parental  KLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVA
          KLLLFLK.FSESERN.LAMLTGVLLANGTLNA.ILNSLYNENLVKEGVSAAFAVKL.KSWINEKDI.AVA
Retrocopy KLLLFLKRFSESERNRLAMLTGVLLANGTLNAPILNSLYNENLVKEGVSAAFAVKLCKSWINEKDISAVA

Parental  SSLRRVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMS-RGDPFK
          SSL..VSMDN.LM...P.NKQSVEHFTKYFTEAGLKE.SEYV.NQQTIG.R.ELQKE.QEQMS.RGDPFK
Retrocopy SSLQKVSMDNKLMGHSPDNKQSVEHFTKYFTEAGLKEPSEYVQNQQTIGVREELQKERQEQMS>RGDPFK

Parental  DIILYVKEEMKKNNIP---EPVVIGLIWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFTTQGQSE
          DIILYVKE.......P...E.VVIG.IWSSVMSTVEWNKK.ELVAEQ.IK...KQYSPLLAAFTTQGQ.E
Retrocopy DIILYVKEMXXXXXXPNIPELVVIG*IWSSVMSTVEWNKK-ELVAEQTIKYM-KQYSPLLAAFTTQGQTE

Parental  LTLLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAE
          ..LLLK.QEYCYDNI.FMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQ.KKFVE.LKNAE
Retrocopy --LLLKMQEYCYDNIYFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQRKKFVECLKNAE

Parental  EESESEAEEGD
          EESESEAEEGD
Retrocopy EESESEAEEGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2561 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003543	8 retrocopies	retro_chof_1519, retro_chof_2060, retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
Myotis lucifugus	ENSMLUG00000001653	2 retrocopies	retro_mluc_1350, retro_mluc_2561 ,
Pteropus vampyrus	ENSPVAG00000008111	1 retrocopy	retro_pvam_773,