RetrogeneDB ID: retro_mluc_1351

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429826:83140..83584(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TTC1
• Ensembl ID: ENSMLUG00000003057
• Aliases: None
• Description: None

Sequence

>retro_mluc_1351
TTACGGGCTTGCCCATCCTGCTTCCAGAAAGACAGTTCTATTCTGTTTTCAGATAGAGCTGCTGCAAGGATGAAACAGGA
CAAGAAAGAGATGGCCATCAGTGACTGCAGCAAAGCCATTCAGCTAAACCCCAGTTACATCAGGGCTCTGCTGAGGCGAG
CAGAGCTGTATGAGAGCACCGACAAGCTCGATGAAGCCCTTTTCAAATCCATTCTAGAAAAAGGTCCATCAGTGCACCAA
GCCAGGGAAGCTTGTATGAGATTACCTAAGCAAACTGAAGAACGAAATGAAAGACTGAAGGAAGAGATGTTAGGTAAACT
AAAAGATCTTGGGAACTTGGTTCTCTGACCTTTTGGACTCTCCACAGAAAATTTCCAGATTAAACAGGATTCGTCTACTG
GCTCCTACTCTATCAATTTTGTTCGAAATCCAAATAATAACAGA

Alignment

ORF - retro_mluc_1351 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.67 %
• Parental protein coverage: 51.19 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEALEDY
          L..CPSCFQKD.SILFS.RAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEAL...
Retrocopy LRACPSCFQKDSSILFSDRAAARMKQDKKEMAISDCSKAIQLNPSYIRALLRRAELYESTDKLDEAL--F

Parental  KSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSI
          KSILEK.PSVHQAREACMRLPKQ.EERNERLKEEMLGKLKDLGNLVL.PFGLSTENFQIKQDSSTGSYSI
Retrocopy KSILEKGPSVHQAREACMRLPKQTEERNERLKEEMLGKLKDLGNLVL*PFGLSTENFQIKQDSSTGSYSI

Parental  NFVQNPNNNR
          NFV.NPNNNR
Retrocopy NFVRNPNNNR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1351 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019397	1 retrocopy	retro_etel_1659,
Myotis lucifugus	ENSMLUG00000003057	2 retrocopies	retro_mluc_1351 , retro_mluc_2408,
Otolemur garnettii	ENSOGAG00000016342	1 retrocopy	retro_ogar_1052,
Tupaia belangeri	ENSTBEG00000004641	1 retrocopy	retro_tbel_3250,
Vicugna pacos	ENSVPAG00000012031	1 retrocopy	retro_vpac_498,