RetrogeneDB ID: | retro_tbel_3250 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_134894:48492..48936(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TTC1 | ||
Ensembl ID: | ENSTBEG00000004641 | ||
Aliases: | None | ||
Description: | tetratricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:12391] |
Percent Identity: | 76.67 % |
Parental protein coverage: | 56.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VPGPNDQHSQNKLLQDEETQWE-DQGEEE-CLLDC-SALFEEQAGVNAESKPDDAVNSSELDEEELLEL- |
VP.P..QHSQ.K.L...E.Q...DQGEEE.C..DC..A.FEE.........PDD.VNSSELDEE.LLEL. | |
Retrocopy | VPDPKGQHSQSKPLKEDEAQTQKDQGEEEECFHDC<RASFEESGMDKLPNRPDDDVNSSELDEECLLEL> |
Parental | EKHMPDEEKQKRREESARLKEEGNEQFKKGEYVEAESSYSQALQMCPSCFQKDRSILFSNRAAARMKQD- |
EK.MPDEEKQKRREESARLKEEGNEQFKKGEY.EAESSYSQALQMCPS.FQKDRSILFSNRAAARMKQD. | |
Retrocopy | EKNMPDEEKQKRREESARLKEEGNEQFKKGEYIEAESSYSQALQMCPSYFQKDRSILFSNRAAARMKQDK |
Parental | KETDISDCSK |
KET.ISDCSK | |
Retrocopy | KETAISDCSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003057 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000016342 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004641 | 1 retrocopy |
retro_tbel_3250 ,
|
Vicugna pacos | ENSVPAG00000012031 | 1 retrocopy |