RetrogeneDB ID: retro_mluc_1529

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429856:2066233..2066499(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002473
• Aliases: None
• Description: None

Sequence

>retro_mluc_1529
AACATATTTGGGAAATACGGACCTATTCGTCAAATCAGAGTGGGGAACACACCTGAAACTAGAGGAACAGCTATGTGGTC
TATGAGGAAATCTTTGATGCCAAGAATGCATGTGATCACCTGTCTGGATTCAATGTTTGTAACAGATACCTTGTGGTTTT
GTACTATAATGCCAACAGAGCATTTCAGAAGATGGACACAAAGAGGAAGGAAGAACAGTTGAAGCTTCTCAAGGAGAAAT
ATGGCATCAATACAGATCCACCAAAG

Alignment

ORF - retro_mluc_1529 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.56 %
• Parental protein coverage: 71.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DIFGKYGPIRQIRVGNTPETRGTA-YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKK
          .IFGKYGPIRQIRVGNTPETRGTA.YVVYE.IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTK.
Retrocopy NIFGKYGPIRQIRVGNTPETRGTA<YVVYEEIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKR

Parental  KEEQLKLLKEKYGINTDPPK
          KEEQLKLLKEKYGINTDPPK
Retrocopy KEEQLKLLKEKYGINTDPPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1529 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000689	3 retrocopies	retro_chof_1217, retro_chof_2457, retro_chof_351,
Myotis lucifugus	ENSMLUG00000002473	1 retrocopy	retro_mluc_1529 ,
Tupaia belangeri	ENSTBEG00000012532	5 retrocopies	retro_tbel_1722, retro_tbel_3076, retro_tbel_3766, retro_tbel_3886, retro_tbel_829,