RetrogeneDB ID: retro_tbel_1722

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_5556:95833..96095(-)
• Located in intron of: ENSTBEG00000002253

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000012532
• Aliases: None
• Description: None

Sequence

>retro_tbel_1722
GATATATTTGGGAAATACGGACCTATTCATCAGATCAGAGTGGGGAACTCGTCTGAAACTAGAGCAACAGCTTATTTGGT
GTATGAAGATATCTTTGATGGCAAGAATGCGTGTGATTCCCTGTCAAGCAGCCAATGTTTGTAACAGGTACCTTGTGGTT
TTGTACTATAATGCCAACAGGGCGTTTCAGAAGATGGACACAGAGAAGGAGGAACAGCTGAGGTTTAAGGAAAAATATGG
CATCAACACAGATCCACCAAAA

Alignment

ORF - retro_tbel_1722 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.33 %
• Parental protein coverage: 77.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS-GFNVCNRYLVVLYYNANRAFQKMDTKK
          DIFGKYGPI.QIRVGN..ETR.TAY.VYEDIFD.KNACD.LS...NVCNRYLVVLYYNANRAFQKMDT..
Retrocopy DIFGKYGPIHQIRVGNSSETRATAYLVYEDIFDGKNACDSLS>AANVCNRYLVVLYYNANRAFQKMDT-E

Parental  KEEQLKLLKEKYGINTDPPK
          KEEQL...KEKYGINTDPPK
Retrocopy KEEQLR-FKEKYGINTDPPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_1722 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_1722 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000689	3 retrocopies	retro_chof_1217, retro_chof_2457, retro_chof_351,
Myotis lucifugus	ENSMLUG00000002473	1 retrocopy	retro_mluc_1529,
Tupaia belangeri	ENSTBEG00000012532	5 retrocopies	retro_tbel_1722 , retro_tbel_3076, retro_tbel_3766, retro_tbel_3886, retro_tbel_829,