RetrogeneDB ID: retro_mluc_1610

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429872:1438315..1439334(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000002234
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SERPINB6
• Ensembl ID: ENSMLUG00000008803
• Aliases: None
• Description: None

Sequence

>retro_mluc_1610
TCTGCCCTGGCCATGGGGGCAGGTGGAGACACTGTGGCCCAGATAGTCCAGGCACTTTATTTCAGTAAAAGTGGTGGCGG
AAGTGAAGATGTCCACCAGGGCTTCCAGACGCTCCTCGCCGAGGTTAACAGGGCTGGCACGCAGTACTTGCTTAGAACTG
CCAACAGGCTCTTCGGAGAAAAGTCCTTTGATTTCAACTTATCTTTCAAAGATTCCTGCCTCAAATTCTACCAAGCAGAG
ATGGAAGAGCTTGACTTCTTCAAAGCTGCAGAGGAGGCTAGAAAACATATCAACACCTGGGTAGCTAACAAGACAGAAGG
TAAAATTACAGAGTTGCTGCCTCCAAATTCAGTTAATCAAAGTACTCCTCTGGTTCTTGTGAATGCCATCTACTTCAAAG
GAAACTGGGACAGCCAGTTTAGCAAGCACCAAACCCAGGAGAGACCATTTAAAGTTAGCAAGAATGAGCAGAAACCTGTG
CAAATGATGTTTAAAAAATCTACCTTTTATATGACCTATGTCGGAGAAATATTCACCAAAATTCTGGTGCTGCTGTACGT
CGGCAAAGAGCTAAACATGATCATCATGCTTCCCGATGAACATGTCGACCTGGAAACGGTGGAAAAGCAGCTCACCTATG
AGAAATTCATAGAATGGACCAGGCCAGATATGATGGATGAAGAAGAGGTGGAAGTGTTCCTCCCTATATTTCAACTGAGG
AGAATTACGACATGAAGGATGTCCTTTACTCTATGGGCATGACCGATGCCTTTGAGCAGGACAAGGCAGACTTCTCTGGA
ATGTCGTCAGGGAGAGACCTGTGTCTGTCCAAGGTCATTCACAAGTCCTTTGTGGAGGTCAACGAGGAAGGCACAGAGGC
TGCGGCCGCCACCGCCGGCATCATCCTCCTTCGATGTGCGAGAATCACGCCCAGGTTCTGTGCTGACCACCCCTTTCTTT
TCTTTATTCACCACAGCAAAACCAATGGTATTCTGTTCTGTGGCCGATTCTCCTCCCCT

Alignment

ORF - retro_mluc_1610 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.32 %
• Parental protein coverage: 81.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SAKGISAPASTGREDPDSLQDVKSGGRSEDVHQGFQTLLAEVNKAGTQYLLRTANRLFGEKSFDFNLSFK
          SA....A...T.......L...KSGG.SEDVHQGFQTLLAEVN.AGTQYLLRTANRLFGEKSFDFNLSFK
Retrocopy SALAMGAGGDTVAQIVQALYFSKSGGGSEDVHQGFQTLLAEVNRAGTQYLLRTANRLFGEKSFDFNLSFK

Parental  DSCLKFYQAEMEELDFFKAAEEARKHINTWVANKTEGKITELLPPNSVNPSTPLVLVNAIYFKGNWDSQF
          DSCLKFYQAEMEELDFFKAAEEARKHINTWVANKTEGKITELLPPNSVN.STPLVLVNAIYFKGNWDSQF
Retrocopy DSCLKFYQAEMEELDFFKAAEEARKHINTWVANKTEGKITELLPPNSVNQSTPLVLVNAIYFKGNWDSQF

Parental  SKQQTQERPFKVSKNEQKPVQMMFKKSTFNMTYIGEIFTKILVLPYVGKELNMIIMLPDEHIDLETVEKQ
          SK.QTQERPFKVSKNEQKPVQMMFKKSTF.MTY.GEIFTKILVL.YVGKELNMIIMLPDEH.DLETVEKQ
Retrocopy SKHQTQERPFKVSKNEQKPVQMMFKKSTFYMTYVGEIFTKILVLLYVGKELNMIIMLPDEHVDLETVEKQ

Parental  LTYEKFIEWTSPDMMDEEEVEVFLPRFKL-EENYEMKDVLYSMGMTDAFEQDKADFSGMSSGRDLCLSKV
          LTYEKFIEWT.PDMMDEEEVEVFLP.F.L.EENY.MKDVLYSMGMTDAFEQDKADFSGMSSGRDLCLSKV
Retrocopy LTYEKFIEWTRPDMMDEEEVEVFLPIFQL<EENYDMKDVLYSMGMTDAFEQDKADFSGMSSGRDLCLSKV

Parental  IHKSFVEVNEEGTEAAAATAAIMLLRCARITPRFCADHPFLFFIQHSKTNGILFCGRFSSP
          IHKSFVEVNEEGTEAAAATA.I.LLRCARITPRFCADHPFLFFI.HSKTNGILFCGRFSSP
Retrocopy IHKSFVEVNEEGTEAAAATAGIILLRCARITPRFCADHPFLFFIHHSKTNGILFCGRFSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1610 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017483	1 retrocopy	retro_btau_827,
Microcebus murinus	ENSMICG00000001981	1 retrocopy	retro_mmur_403,
Myotis lucifugus	ENSMLUG00000008803	1 retrocopy	retro_mluc_1610 ,
Myotis lucifugus	ENSMLUG00000016858	1 retrocopy	retro_mluc_315,
Monodelphis domestica	ENSMODG00000005468	2 retrocopies	retro_mdom_510, retro_mdom_602,
Mustela putorius furo	ENSMPUG00000000448	1 retrocopy	retro_mputfur_1037,
Mus musculus	ENSMUSG00000060147	2 retrocopies	retro_mmus_3191, retro_mmus_3192,
Pteropus vampyrus	ENSPVAG00000010001	1 retrocopy	retro_pvam_1243,
Tursiops truncatus	ENSTTRG00000003879	2 retrocopies	retro_ttru_1224, retro_ttru_1837,