RetrogeneDB ID: retro_mluc_1622

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429874:1143289..1144496(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026042
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1622
GATGCCAAGATATTTCTGAGTGACTGCCTGGCGTGTGACAGTTGTGTGACCGCAGAGGAAGGAGTCCAAGTTTCTCAACA
GAACACCAAGGACTTCTTCCGTGTTCTGAACCTTAAAAAGAAATGTGATACCTCATAGCACAAGGTGCTGGCAGTGTCTG
TGTGTCCTCAGTCTCTGCCTTGTTTTGCTGCTAAATTCAGCCTCAGTGTCACTGGTGCATCCAGAAGGCTCTGTGGCTTC
CTCAAAAGCCTTGGGGTGCACTGTCTTTGACATGAAGATAGCTGCAGACTCAGCATCCTGGAGTCAGAAGGAATTTGTGC
GTTGGTACTGCCAGCACCATGAGGAAGAGCCCCAGCCAACCATGCTGACCTCCGCCTGCCCCAGCTGGGTCCAATATGCA
GAGCATTGCTGGGTCACCCCATCACCCCCACCTCTCCACGGCCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAAGG
ATTACTTCACCAGACTGCAGAACCTGTCCCCAGACAAGATTTTCCACGTCATTGTGGCCCCATGTTATGACAAGAAACTG
GAGGCCCTTTGAGAAGATGTTCCCACAGCTTTACATAGTTCCCAGGGTGCTGACTACATGTTAACCTCAGGTGAAATTGT
CCAGATAATGGAGCAAAGTGACTTCGCCTCGAATGATGCCGCCATGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGG
TGAGGCTCCACGAGGGTGCCAGCTCCGACGGGTACCTGGCGCAGATCTTCAGGCACATGGCCAAGGAGTTGTTCAACGAG
GACGTGGGAGTGCTCACCTATCGCATCCTGAGGAACAAAGACTTCCAGGAGGTCACCCTGAAAGGGACAGAGAGGTTCTG
CTACGCTTTGAGGCTGCTTATGGCTTTCAGAACATCCAGAAGTGGTCCTGAAGCTGTAGAGGGGCAAGTTCCCCTGCCAC
TTCATGGAGCTCCTGGCCTGCACCGGGCATGCCTAAGCAGCAGGGGCCAGGCCCAGGCGGATGACAGGTGTGCAGATAGG
GCACTGCTGCAGCAGATGGAAGACATCTACACTGCCATCCCGGTGTGTCCCCCGGAGACCAGCGCCATGTGCAGGAGATG
TACCAGGAGTGGCTGGGGGTGGGGGAGCGACTCCCCCGGGCCCAGGTGGCCCTGAACACCGCCTAGCAGGGCCCAGGGCA
GCCTGCC

Alignment

ORF - retro_mluc_1622 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.57 %
• Parental protein coverage: 88.86 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  DAKIFLSDCLACDSCVTAEEGVQVSQQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSV
          DAKIFLSDCLACDSCVTAEEGVQVSQQN.KDFFRVLNL.KKCD.S.HKVLAVSVCPQSLP.FAAKFSLSV
Retrocopy DAKIFLSDCLACDSCVTAEEGVQVSQQNTKDFFRVLNLKKKCDTS*HKVLAVSVCPQSLPCFAAKFSLSV

Parental  TDASRRLCGFLK-SLGVHYVFDMTIAADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAER-V
          T.ASRRLCGFLK..LG...VFDM.IAAD.S...SQKEFVR.Y.QH.EEEP...MLTSACP.WV.YAE...
Retrocopy TGASRRLCGFLK>ALGCT-VFDMKIAAD-SASWSQKEFVRWYCQHHEEEPQPTMLTSACPSWVQYAEH<L

Parental  LGHPITP-HLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGAD
          LGHPITP.HL.TAKSPQQIMGSLVKDYF.R.QNLSPDKIFHVIVAPCYDKKLEAL.EDVPTALHSS.GAD
Retrocopy LGHPITP<HLSTAKSPQQIMGSLVKDYFTRLQNLSPDKIFHVIVAPCYDKKLEAL*EDVPTALHSSQGAD

Parental  CVLTSGEIVQLMEQSDLSADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGAL
          ..LTSGEIVQ.MEQSD....DA..DTL...FGD.KE.EVR.HEGASSDGYLA.IFRH.AKELFNEDVG.L
Retrocopy YMLTSGEIVQIMEQSDFASNDAAMDTL---FGDMKEKEVRLHEGASSDGYLAQIFRHMAKELFNEDVGVL

Parental  TYRSLRNKDFQEVTL-ERDGEVLLRFAAAYGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQA
          TYR.LRNKDFQEVTL.ERD.EVLLRF.AAYGF.NIQ..VVLKL.RGKFP.HF.E.LAC.G..CLS.RGQA
Retrocopy TYRILRNKDFQEVTL<ERDREVLLRFEAAYGFQNIQ<EVVLKL*RGKFPCHFMELLACTG<ACLSSRGQA

Parental  QAEDGRADRALLRQMEGIYAAIPVRPPETSA-HVQELYQEWLG-GADSPRPR-ALHTAYQGPGQSA
          QA.D..ADRALL.QME.IY.AIPV.PPETSA.HVQE.YQEWLG.G...PR...AL.TA.QGPGQ.A
Retrocopy QADDRCADRALLQQMEDIYTAIPVCPPETSA<HVQEMYQEWLGVGERLPRAQVALNTA*QGPGQPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1622 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622 , retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,