RetrogeneDB ID: retro_mluc_982

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:6392140..6393304(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025734
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_982
ATGAAGTGTGATCACTGCAAACAAAAGGAATGTAGTAAAAAACCAAAAACTGATGACCAAGAGAATGCCGCAGTCAACGT
CCGGAATCCGGCTCAGGAGAACGGAGAGAAGGGAGAATTCCCTAAGGTGACCGATACCAAGATATTTCTGAGTGACTGCC
TGGTGTGTGACAGTTGTCTGACCACAGAGGAAAGAGTCCAGGTTTCTCAACAGAACACCAAGGACTTCTTCCATGTTCTG
AACCTTAATAAGAAATGTGATACCTCACAGCAAAAGGTGCTGGCAGTGTCCGTGTGTCCTTAGTCTCTGCCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTCACTGGTGCATCCAGAAGACTCTGAGTCTTCCTCAAAAGCCTTGGGGCGCACTGTCTTT
GACATGAAGATAGCTGCGAACTTCAGCATCCTGGAGAGTCAGAAGGAATTTGTGCGTCAGTACTGCCAGCACCATGAGGA
AAAGCCCCGGCTACCCATGCTGACCTCCGCCTGCCCTGGCTGGGACCAATATATAGAGTGTGTGCTGGGTCACCCCATCA
CCCTCACCTCTGCACGGCAATGTCTTCCCAGCAGATCATGGGCTCTCTGGTGAAGGACTACTTCACCGGACAACAGAACC
TTTCCCCAGACAAGATTTTCCACGCCATTGTGGCCCCATGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCC
ACAGCTTTACATAGTTCTCAGAGAGCTGACTGTGCGTTAACCTCAGGTGAAACTGTCCAGATAATGGAGCAAAGTGACCT
CGCCTCGAATGACACCGCTGTGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCATGAGGGTGCCAGCT
CCGATGGGTACCTGGCACACATCTTCAGACACATGGCCAAGGAGCTGCTCAACAAGGACATGGGAGTGCTCACCTACCGC
ATCCTGAGGAACAAAGACTTCCAGGAGGTCACCCTTGAAAGTGACGAAGAGGTGCTGCTACGCTTTGAGGCTGCTTACCG
CTTTCGAAACATCCAGAAGTGGTCCTGAAGCTGTAGAGGGGCAAGTTCCCCTGCCACTTTGTGGAGGTCCTGGCCTGCGC
CGGGCATGCCTAAGTGGCAGGGCCAGGCCCAGGCGGACGACGGG

Alignment

ORF - retro_mluc_982 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.4 %
• Parental protein coverage: 85.81 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          MKC.HC..KECSKK.KTDDQENA......PAQENGEKGEF.K..D.KIFLSDCL.CDSC.T.EE.VQVSQ
Retrocopy MKCDHCKQKECSKKPKTDDQENAAVNVRNPAQENGEKGEFPKVTDTKIFLSDCLVCDSCLTTEERVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS-LGVHYVFDMTIA
          QN.KDFF.VLNLNKKCD.SQ.KVLAVSVCP.SLPYFAAKFSLSVT.ASRRL..FLKS.LG...VFDM.IA
Retrocopy QNTKDFFHVLNLNKKCDTSQQKVLAVSVCP*SLPYFAAKFSLSVTGASRRL*VFLKS>LG-RTVFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPIT-PHLCTAKSPQQIMGSLVKDY
          A.FSILESQKEFVR.Y.QH.EE.PRLPMLTSACPGW..Y.E.VLGHPIT.PHLCTA.S.QQIMGSLVKDY
Retrocopy ANFSILESQKEFVRQYCQHHEEKPRLPMLTSACPGWDQYIECVLGHPIT<PHLCTAMSSQQIMGSLVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          F...QNLSPDKIFH.IVAPCYDKKLEAL.EDVPTALHSS..ADC.LTSGE.VQ.MEQSDL...D..VDTL
Retrocopy FTGQQNLSPDKIFHAIVAPCYDKKLEAL*EDVPTALHSSQRADCALTSGETVQIMEQSDLASNDTAVDTL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAA
          ...FGD.KE.EVR.HEGASSDGYLAHIFRH.AKEL.N.D.G.LTYR.LRNKDFQEVTLE.D.EVLLRF.A
Retrocopy ---FGDMKEKEVRLHEGASSDGYLAHIFRHMAKELLNKDMGVLTYRILRNKDFQEVTLESDEEVLLRFEA

Parental  AYGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGR-GQAQAEDG
          AY.FRNIQ..VVLKL.RGKFP.HFVEVLACAG..CLSGR.GQAQA.DG
Retrocopy AYRFRNIQ<EVVLKL*RGKFPCHFVEVLACAG<ACLSGR<GQAQADDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_982 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982 ,