RetrogeneDB ID: retro_mluc_1768

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429905:3043978..3045063(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000000520
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PPP2R5A
• Ensembl ID: ENSMLUG00000009549
• Aliases: None
• Description: None

Sequence

>retro_mluc_1768
GAAAAGCGCTCCCAGGGCTCGTGGCAGTTCCGCCGCCAGGGCAGCCCCGAGGAGCGGCAGCCCCTGCCCCAACTCAAAGA
TGCCACTTCAAACGAACAACAAGAACTCTGCTGTCAGAAGTTGCAACAGTGTTGTGTACTGTTTGATTTCATGGACTCTG
TTTCAGACTTGAAGAGCAAAGAAATTAAGAGAGCAGCACTGAATGAACTGGTTGAGTATGTTTTCAACTAGTCGTGGTGT
AATTGTTGAATCAGCGTATTCTGATATAGTCAGAATGATCAGTGCAAATATCTTCCGTACTCTTCCGCCAAGTGATAATC
CAGATTTTGATCCAGAGGATGAACCCACACTTGGGGCTTCTTGGCCTCACATACAATCGGTATATGAATTTCTTCTTAAG
ATTTTTGGAAAGCCCTGATTTCCAGCCCAGCATTGCAAAGCGATACGTTGGTCAGAAATTTGTACAACAGATCCTGGAAC
TTTTTGATAGTGAAGTTCCCAGAGAACGTGACTTCCTGAAGACTGTTCTGCATCGAATTTATGGGAAATTTCTTGGATTA
AGAGCATTCATCAGGAAACAAATTAACAACATTTTCCTCAGGTTTACATATGAAACAGAACATTTCAATGGTGTTGCTGA
ACTCCTGGAAATATTAGGAAGTATTATCAATGGCTTTGCATTGCCACTGAAAACAGAACATAAACAATTTCGAATGAAGG
TTCTTATTCCTATGCATACTGCAAAAGGATTAGCTTTGTTTCATGCTCAGTTAGCCTACTGTGTTGTACAGTTCCTGGAG
AAAGATACAACACTAACAGAACCAGTGACCAGAGGATTGCTGAAATTTTGGCCAAAAACATGCAGCCAGAAAGAGGTGAT
GTTTTTAGGAGAAACTGAAGAAATCTTAGATGTCATTGAACCAACACAGTTCAAAAAAATTGAAGAGCCCCTTTTTAAGC
AAATATCTAAGTGTGTATCCAGTTCTCATTTTCAGATTGCAGAAAGGGCGTTGTACTTCTGGAATAATGAATATATTCTT
AGTTTGATTGAGGAGAATATTGATAAAATTCTGCCAATTATGTTT

Alignment

ORF - retro_mluc_1768 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.41 %
• Parental protein coverage: 74.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QKRSQGSSQFRSQGSPVELQPLPQLKDATSNEQQELFCQKLQQCCVLFDFMDSVSDLKSKEIKRATLNEL
          .KRSQGS.QFR.QGSP.E.QPLPQLKDATSNEQQEL.CQKLQQCCVLFDFMDSVSDLKSKEIKRA.LNEL
Retrocopy EKRSQGSWQFRRQGSPEERQPLPQLKDATSNEQQELCCQKLQQCCVLFDFMDSVSDLKSKEIKRAALNEL

Parental  VEYV-STNRGVIVESAYSDIVKMISANIFRTLPPSDNPDFDPEEDEPTLEASWPHIQLVYEF-FLRFLES
          VEYV.ST.RGVIVESAYSDIV.MISANIFRTLPPSDNPDFDPE.DEPTL.ASWPHIQ.VYEF.FLRFLES
Retrocopy VEYV>STSRGVIVESAYSDIVRMISANIFRTLPPSDNPDFDPE-DEPTLGASWPHIQSVYEF>FLRFLES

Parental  PDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEH
          PDFQPSIAKRY..QKFVQQ.LELFDSE.PRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRF.YETEH
Retrocopy PDFQPSIAKRYVGQKFVQQILELFDSEVPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFTYETEH

Parental  FNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIR
          FNGVAELLEILGSIINGFALPLK.EHKQF.MKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPV.R
Retrocopy FNGVAELLEILGSIINGFALPLKTEHKQFRMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVTR

Parental  GLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNEYILS
          GLLKFWPKTCSQKEVMFLGE.EEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQ.AERALYFWNNEYILS
Retrocopy GLLKFWPKTCSQKEVMFLGETEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQIAERALYFWNNEYILS

Parental  LIEENIDKILPIMF
          LIEENIDKILPIMF
Retrocopy LIEENIDKILPIMF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1768 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009549	1 retrocopy	retro_mluc_1768 ,
Mus musculus	ENSMUSG00000026626	5 retrocopies	retro_mmus_2410, retro_mmus_2415, retro_mmus_2417, retro_mmus_2421, retro_mmus_3390,
Pteropus vampyrus	ENSPVAG00000010468	1 retrocopy	retro_pvam_1209,
Rattus norvegicus	ENSRNOG00000000068	1 retrocopy	retro_rnor_2107,
Tarsius syrichta	ENSTSYG00000013786	1 retrocopy	retro_tsyr_1135,
Vicugna pacos	ENSVPAG00000011662	1 retrocopy	retro_vpac_63,