RetrogeneDB ID: retro_mluc_187

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430260:410712..410928(+)
• Located in intron of: ENSMLUG00000016739

Retrocopy information

• Ensembl ID: ENSMLUG00000008187
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: COX7A1
• Ensembl ID: ENSMLUG00000012331
• Aliases: None
• Description: None

Sequence

>retro_mluc_187
CAGAGGACCATAAGAACTGCTTCACGCAGGCAGTTTGAAAATAAAGTTCCAGAGAAACAAAAGCTATTTCAGGAGGACAA
TGGAATTCCAGTGCATCTAAAGGATGGGGTAGCTGATGCCTTCCTGTATAGAACTACCATGATTCTTACAGTTGGTAGAA
CAACTTATGCCATATATCAGCTGGCTATGGCTTCACTTCCCAAGAAGCGGGGTTGA

Alignment

ORF - retro_mluc_187 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.72 %
• Parental protein coverage: 86.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSFSSTARNRLENRVAEKQKLFQADNDLPVHLKGGGTDNILYRLTMGLCLGGTVYSLYCLGWASFPHQK
          R......R...EN.V.EKQKLFQ.DN..PVHLK.G..D..LYR.TM.L..G.T.Y..Y.L..AS.P...
Retrocopy RTIRTASRRQFENKVPEKQKLFQEDNGIPVHLKDGVADAFLYRTTMILTVGRTTYAIYQLAMASLPKKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_187 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012840	1 retrocopy	retro_chof_305,
Echinops telfairi	ENSETEG00000007654	1 retrocopy	retro_etel_2078,
Myotis lucifugus	ENSMLUG00000012331	1 retrocopy	retro_mluc_187 ,
Macaca mulatta	ENSMMUG00000000250	3 retrocopies	retro_mmul_1665, retro_mmul_1968, retro_mmul_2489,
Monodelphis domestica	ENSMODG00000025577	1 retrocopy	retro_mdom_1288,
Pan troglodytes	ENSPTRG00000010888	1 retrocopy	retro_ptro_125,