RetrogeneDB ID: retro_mluc_1907

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429943:1483030..1483536(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPP1CB
• Ensembl ID: ENSMLUG00000003785
• Aliases: None
• Description: Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:G1P0Y8]

Sequence

>retro_mluc_1907
ATTCTTTTGGAGGTGAAAGCACCACTGAGAATTTGTGGAGATATTCATGGACAGCATACAGATTAACTACGATTATCTGA
CTATGGAGGTTTCCCACAAGGAGCCAACTATCTTTTCTTAGGAGAGAATGTGGATAGAGGAAAGTAGTCTTTGCAAACCA
TTTGTTTGCTATTGGCTTAAAAAAGTCAAATTTCCAGAGAACTTCTTTCTCTTAAGAGGAAACCATGAGTGTGCTGGCAT
CGATCGCATGTATGGGTTCTATGATGAATGCAAACAAAGGTTCAATATCACATTGTGGACGACCTGCACAGACTGTCCCA
ACTGCCTGCCTACAGCTGCCATTGCAGCGAGGAGGTCTGTTGCCATGGAGGACTGTCAGCAAACCTGCAATCGAGGAAGC
AGAGTTGGAGAGTTATGGGACCCACCGATGTCCCCCATACAAGTCTGCTCTGTGATCTGCTGTGGTCTGACCCAGAGAAG
GATGGCAAGGCTGGGGAGAAAATAAC

Alignment

ORF - retro_mluc_1907 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.41 %
• Parental protein coverage: 54.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLA-YKIKYPENFF
          ILLE..APL.ICGDIHGQ.TD.LRL..YGGFP..ANYLFLG..VDRGK.SL.TICLLLA..K.K.PENFF
Retrocopy ILLEVKAPLRICGDIHGQHTD*LRLSDYGGFPQGANYLFLGENVDRGK*SLQTICLLLA>KKVKFPENFF

Parental  LLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIV-DEKIFCCHGGLSPDLQSMEQIRR
          LLRGNHECA.I.R.YGFYDECK.RFNI.LW.T.TDC.NCLP.AAI...E...CCHGGLS..LQS..Q..R
Retrocopy LLRGNHECAGIDRMYGFYDECKQRFNITLWTTCTDCPNCLPTAAIA<SEEV-CCHGGLSANLQSRKQSWR

Parental  IMRPTDVPDTGLLCDLLWSDPDKD-VQGWGEND
          .M.PTDVP.T.LLCDLLWSDP.KD..QGWGEN.
Retrocopy VMGPTDVPHTSLLCDLLWSDPEKD<WQGWGENN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1907 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000859	5 retrocopies	retro_chof_2023, retro_chof_2063, retro_chof_2076, retro_chof_2154, retro_chof_539,
Myotis lucifugus	ENSMLUG00000003785	1 retrocopy	retro_mluc_1907 ,
Myotis lucifugus	ENSMLUG00000010661	2 retrocopies	retro_mluc_15, retro_mluc_2217,