RetrogeneDB ID: retro_mluc_15

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430038:219370..220336(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028570
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: PPP1CC
• Ensembl ID: ENSMLUG00000010661
• Aliases: None
• Description: protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283]

Sequence

>retro_mluc_15
ATGGCGGATGTAGACAACCTCAACGTCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTCCAGCTGCAGGAGGATGAAATCAGAGGACTGTGCTTAACATCTCAAAAGATCTTTCTGCACCAGCCCATCCTGCTAG
AGCTCGAAGCCCCGCTCAAAATATGTGGCGATATCAATGGGCAATACGATGATTTGCTTCGACTCTTTGATTTCGGTGGT
TTCCCCCCAGAAAGCAACTACCTGTTTCTCGGGGACTACGTGGACAGCGGGAAGCAGTCGCTGGAGACTATCTGCCTCTT
GCTGGCCTACAAAGTCAAATATCCCCAGAATTTTTTCCTTCTCAGAGGAATCCACGAATGTGCCAGCATCAATGGAATTT
ACGGATTTTATGATGAGTGTAAAAGAAGATACAACATTAAACTATGGAAAACTTTCACAGACTGCTTTAAGTGTTTACCG
ATAGCAGCCATCGTGAATGAGAAGATATTTTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCA
ATGTATTATGCGGCCAACCGATGTGCCAGATCAAGGTCTTCTTTGTGATCTTCTGTGGTCTGACCCCAATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGGGTGTCCTTCACATTTGGTGCCGAAGTGGTTGCAAAATTTCTGCAGAAGCATGAT
TTGGGTCTTATATGTAGAGCCCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCACAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAATTACTGTAGAGAGTTTGACAATGCAGGCGCCATGATGAGTGTGGACGAAACACTAATGTGCTCTTTTC
AGGTCTTAAAGCCGGCAGAGAAGTGGAGTGCCCTGAGACCCGCAACACCTCCCCGGGGTATGATCACAAAGCAAGCAAAG
AAATAG

Alignment

ORF - retro_mluc_15 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.49 %
• Parental protein coverage: 94.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL
          VRGSKPGKNVQLQE.EIRGLCL.S..IFL.QPILLELEAPLKICGDI.GQY.DLLRLF..GGFPPESNYL
Retrocopy VRGSKPGKNVQLQEDEIRGLCLTSQKIFLHQPILLELEAPLKICGDINGQYDDLLRLFDFGGFPPESNYL

Parental  FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNC
          FLGDYVD.GKQSLETICLLLAYK.KYP.NFFLLRG.HECASIN.IYGFYDECKRRYNIKLWKTFTDCF.C
Retrocopy FLGDYVDSGKQSLETICLLLAYKVKYPQNFFLLRGIHECASINGIYGFYDECKRRYNIKLWKTFTDCFKC

Parental  LPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFG
          LPIAAIV.EKIFCCHGGLSPDLQSMEQI..IMRPTDVPDQGLLCDLLWSDP.KDVLGWGENDRGVSFTFG
Retrocopy LPIAAIVNEKIFCCHGGLSPDLQSMEQIQCIMRPTDVPDQGLLCDLLWSDPNKDVLGWGENDRGVSFTFG

Parental  AEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP
          AEVVAKFL.KHDL.LICRAHQVVEDGYEFFA.RQLVTLFSAPNYC.EFDNAGAMMSVDETLMCSFQ.LKP
Retrocopy AEVVAKFLQKHDLGLICRAHQVVEDGYEFFAQRQLVTLFSAPNYCREFDNAGAMMSVDETLMCSFQVLKP

Parental  AEKKKPSATRPVTPPRGMITKQAKK
          AEK...SA.RP.TPPRGMITKQAKK
Retrocopy AEKW--SALRPATPPRGMITKQAKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_15 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 31 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013861	1 retrocopy	retro_amel_1721,
Bos taurus	ENSBTAG00000011198	2 retrocopies	retro_btau_6, retro_btau_960,
Ciona intestinalis	ENSCING00000004542	1 retrocopy	retro_cint_3,
Callithrix jacchus	ENSCJAG00000009147	7 retrocopies	retro_cjac_1062, retro_cjac_1165, retro_cjac_1408, retro_cjac_2304, retro_cjac_2535, retro_cjac_3288, retro_cjac_822,
Equus caballus	ENSECAG00000017228	1 retrocopy	retro_ecab_853,
Echinops telfairi	ENSETEG00000015721	1 retrocopy	retro_etel_2065,
Myotis lucifugus	ENSMLUG00000003785	1 retrocopy	retro_mluc_1907,
Myotis lucifugus	ENSMLUG00000010661	2 retrocopies	retro_mluc_15 , retro_mluc_2217,
Mus musculus	ENSMUSG00000004455	5 retrocopies	retro_mmus_2274, retro_mmus_2968, retro_mmus_3418, retro_mmus_851, retro_mmus_925,
Sorex araneus	ENSSARG00000000571	1 retrocopy	retro_sara_700,
Tupaia belangeri	ENSTBEG00000013852	4 retrocopies	retro_tbel_1710, retro_tbel_2116, retro_tbel_2311, retro_tbel_4450,
Drosophila melanogaster	FBgn0003134	5 retrocopies	retro_dmel_21, retro_dmel_37, retro_dmel_42, retro_dmel_48, retro_dmel_81,