RetrogeneDB ID: retro_mluc_1950

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429959:1814104..1814692(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002456
• Aliases: None
• Description: None

Sequence

>retro_mluc_1950
CAAGCTCTGCACTCGCACTGCTGGTTTCTGGGACCTTGGCAGACACAGATTAGAGACACCTACCAGCAAGCTTCCTTGTT
GTCTTTTTTGGAACTCATTTCCATTAGAGCAGAACCTCTTCAAAAAGGAGAAGAAGGGTAGATCCAAACAAAGACCAAGC
TGCTATGGGCCATTTGAAAAAGAGGAACAGATGACTAGAAAAGGCTGGCCAGGACCTAATTCCCACTGAAGATTTTATTA
TACCTGGAGGTTCTTGGACAAAGTGAGACAATAACCTTAGGTAGAGCTCTCCTTTGAGGAGGCTGAGTGGAGAGCTTTGC
TTCTGAAGAAGTGGTCCCTGTACAAGCAGGGAGAGAATAAGATGGAGAGGAAAGCCATCAAGTCCATGCTTGAGGTGCAG
CAAGAAGTTCTGCACAAACTACAACTCCTGTCCCAGGAGCTCTAAGTGGAAGCCATCAAGCAGGACTCCAGTCTGCTCCC
CTTTAAGAGAGAAGGACCAGATTACACACACTGCTCTCCAACTACTAGCCCCCTGAAGGCCGGTATCATGACATCATCAA
GGTGTACACACAAGTGGGGTCCAAGAGG

Alignment

ORF - retro_mluc_1950 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.0 %
• Parental protein coverage: 95.15 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RALRSPCWRLGIWQTQVRDTHQRASLLSFWELIPTRAEPL-RKKKK-VDPKKDQAVKDRLKKRIRRLEKA
          .AL.S.CW.LG.WQTQ.RDT.Q.ASLLSF.ELI..RAEPL..K.KK.VDP.KDQA....LKKR.R.LEKA
Retrocopy QALHSHCWFLGPWQTQIRDTYQQASLLSFLELISIRAEPL>KKEKK>VDPNKDQAAMGHLKKRNR*LEKA

Parental  SQELIPIEDFIIP-VKFMDKVRQRPEVELSFEEAERRALLLKKWSLYKQREHEMERKAIKSMLEAQQEAL
          .Q.LIP.EDFIIP...F.DKVRQ.P.VELSFEEAE.RALLLKKWSLYKQ.E..MERKAIKSMLE.QQE.L
Retrocopy GQDLIPTEDFIIP<WRFLDKVRQ*P*VELSFEEAEWRALLLKKWSLYKQGENKMERKAIKSMLEVQQEVL

Parental  QELQLTSQELYAEAIKRDYNLFPFEREGPAYT-PPISNYQPPEGRYHDITKVYTQVEFKR
          ..LQL.SQEL..EAIK.D..L.PF.REGP.YT....SNY.PPEGRYHDI.KVYTQV..KR
Retrocopy HKLQLLSQEL*VEAIKQDSSLLPFKREGPDYT<TLLSNY*PPEGRYHDIIKVYTQVGSKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1950 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000001053	1 retrocopy	retro_acar_149,
Ailuropoda melanoleuca	ENSAMEG00000011421	1 retrocopy	retro_amel_257,
Callithrix jacchus	ENSCJAG00000001584	1 retrocopy	retro_cjac_3220,
Equus caballus	ENSECAG00000009876	1 retrocopy	retro_ecab_687,
Homo sapiens	ENSG00000185608	1 retrocopy	retro_hsap_1020,
Gorilla gorilla	ENSGGOG00000012336	1 retrocopy	retro_ggor_807,
Myotis lucifugus	ENSMLUG00000002456	1 retrocopy	retro_mluc_1950 ,
Macaca mulatta	ENSMMUG00000016081	1 retrocopy	retro_mmul_57,
Mustela putorius furo	ENSMPUG00000003865	1 retrocopy	retro_mputfur_394,
Nomascus leucogenys	ENSNLEG00000005372	1 retrocopy	retro_nleu_899,
Pongo abelii	ENSPPYG00000011578	1 retrocopy	retro_pabe_857,
Rattus norvegicus	ENSRNOG00000049686	1 retrocopy	retro_rnor_1624,
Tarsius syrichta	ENSTSYG00000014747	1 retrocopy	retro_tsyr_1589,