RetrogeneDB ID: retro_mluc_2

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429947:865302..865872(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022312
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015299
• Aliases: None
• Description: None

Sequence

>retro_mluc_2
ATGAACCATTCCCACCATATGGGGATGAACTCTGTGGACCACACCAGTACCATGCCACCTTCTCACCATCACACGGCCAC
TTCAGCCACCCACCTCCACGGAGGGGGGGATGGCAACATGATGATGATGCATATGACCTTCTACTTTGGCTTTAAGAGTG
TGGAACTATTGTTTTCTGGTGTGGTGATCAATACAGCTGGAGAAATGGCGGGAGCTTTTGTGGGAGTGTTTTTACTAGCA
ATGTTCTATGAAGGACTCAGGATAGCCCGAGAGAGCCTGCTACGCAAGTCACAAGTCAGCATTCGCTACAATTCCATGCC
TGTTCCAGGACCAAATGGGACCATTCTTATGGAGACACACAGAACTGTTGGGCAGCAGATGCTGAGCTTCCCTCCCCTCC
TGCAAACAGTGCTGCATCCCACCCAGGTGGTCATCGGCTTCCTCATGCTCCTCTTCACGACCTACAGTGGGAACCCCTGC
GTTGCTGTAGCAGCAGGGGCCGGCACAGGAGACTTTGTCCTCAGCTGGAAGAAGGCAGGGGTAGTGGACATCACAGAGCA
TTGCCATTAA

Alignment

ORF - retro_mluc_2 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.39 %
• Parental protein coverage: 96.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSHSHHMVTNSVDHTSTMPPSHHHPATSASHLHGGGDGNMMMMMPMTFYFGFKNVELLFSGLVINTAGEM
          M.HSHHM..NSVDHTSTMPPSHHH.ATSA.HLHGGGDGNMMMM..MTFYFGFK.VELLFSG.VINTAGEM
Retrocopy MNHSHHMGMNSVDHTSTMPPSHHHTATSATHLHGGGDGNMMMMH-MTFYFGFKSVELLFSGVVINTAGEM

Parental  AGAFVGVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLH
          AGAFVGVFLLAMFYEGL.IARESLLRKSQVSIRYNSMPVPGPNGTILMETH.TVGQQMLSFP.LLQTVLH
Retrocopy AGAFVGVFLLAMFYEGLRIARESLLRKSQVSIRYNSMPVPGPNGTILMETHRTVGQQMLSFPPLLQTVLH

Parental  IIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH
          ..QVVI..FLML.F.TY.G..C.AVAAGAGTG.F..SWKKA.VVDITEHCH
Retrocopy PTQVVIG-FLMLLFTTYSGNPCVAVAAGAGTGDFVLSWKKAGVVDITEHCH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011908	5 retrocopies	retro_chof_1186, retro_chof_1646, retro_chof_1661, retro_chof_644, retro_chof_776,
Felis catus	ENSFCAG00000005512	1 retrocopy	retro_fcat_425,
Macropus eugenii	ENSMEUG00000015425	2 retrocopies	retro_meug_1049, retro_meug_1533,
Microcebus murinus	ENSMICG00000015008	2 retrocopies	retro_mmur_1465, retro_mmur_46,
Myotis lucifugus	ENSMLUG00000015299	1 retrocopy	retro_mluc_2 ,
Nomascus leucogenys	ENSNLEG00000016636	1 retrocopy	retro_nleu_622,
Pongo abelii	ENSPPYG00000019514	3 retrocopies	retro_pabe_2386, retro_pabe_3548, retro_pabe_847,
Sorex araneus	ENSSARG00000012787	7 retrocopies	retro_sara_101, retro_sara_326, retro_sara_497, retro_sara_584, retro_sara_585, retro_sara_586, retro_sara_730,
Tupaia belangeri	ENSTBEG00000009011	2 retrocopies	retro_tbel_3123, retro_tbel_4170,