RetrogeneDB ID: | retro_sara_326 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_163879:3453..3768(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC31A1 | ||
Ensembl ID: | ENSSARG00000012787 | ||
Aliases: | None | ||
Description: | solute carrier family 31 (copper transporter), member 1 [Source:HGNC Symbol;Acc:11016] |
Percent Identity: | 56.19 % |
Parental protein coverage: | 55.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDHHSHHMGMSSMDHNSTTPPSHHHTTTSSSH-HGGGGMMMQMTFYFGYKNVEILFAGLVINTPGEMAGA |
MDH..HH.GMS.M.H.ST..P......TS..H.HGGG...M.MTFYFGYKN.E.LFAGL.I.....MA.A | |
Retrocopy | MDHSHHHSGMSTMGHTSTPAPPQQPPATSGPHSHGGGAHSMPMTFYFGYKNMELLFAGLLIDSALAMALA |
Parental | FVAVFLLAMYYEGLKIARERLLRKSQVSIRYNSMP |
F.AVFLLA..YEGLK.ARERL........R....P | |
Retrocopy | FLAVFLLALGYEGLKRARERLHAQCSAFSRPGTCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011908 | 5 retrocopies | |
Felis catus | ENSFCAG00000005512 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015425 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000015008 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000015299 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016636 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019514 | 3 retrocopies | |
Sorex araneus | ENSSARG00000012787 | 7 retrocopies |
retro_sara_101, retro_sara_326 , retro_sara_497, retro_sara_584, retro_sara_585, retro_sara_586, retro_sara_730,
|
Tupaia belangeri | ENSTBEG00000009011 | 2 retrocopies |