RetrogeneDB ID: retro_mluc_2296

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430184:927647..928228(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023488
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001925
• Aliases: None
• Description: None

Sequence

>retro_mluc_2296
ATGGCTGATCAGGACCCTGGGGGCATCAGCCCCCTTCAACAGATGGTGGCCTCAGGTGCCGGGGCTGTGGTCACCTCCAT
CTTCATGATCCCCCTGGACGTGGTGAAGGTCCACCTGCAGTCTCAGCGTCCCTCGGTGACCAGCAAACTGATGCCTCCCT
CCAGACTCTGGAGCCTCTCTTACACCAAATTGCCCTCCTCTCTCCGACCCACAGGGAAGTGCCTCCTCTACTGCAATGGT
GTCCTGGAACCCCTGCACCTGTGCCCAAATGGTGCCCACTGTGCCACCTGGTTTCAGGACCCCACTCGCTTCACTGGCAC
CATGGATGCCTTTGTGAAGATTGAGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGA
CTGTGCCAGCAACCGCCATCTCCTTCACGGCCTATGACCAACTCAAGGCCTTCCTGTGTGGTCGAGCCCTGACCTCTGAC
TTCTATGCACCCATGGTGGCTGGTGCATTGGTCGCTTGGGCACCGTGACTGTGATAAGCCCCCTAGAGCTGGTACGGACA
AAGCTGCAGGCTCAGCATGTC

Alignment

ORF - retro_mluc_2296 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.82 %
• Parental protein coverage: 54.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MADRDPGGISPLQQMVASGAGAVVTSIFMTPLDVVKVRLQSQRPSVPSDAVPPSRLWSLSYTKLPSSLRP
          MAD.DPGGISPLQQMVASGAGAVVTSIFM.PLDVVKV.LQSQRPSV.S...PPSRLWSLSYTKLPSSLRP
Retrocopy MADQDPGGISPLQQMVASGAGAVVTSIFMIPLDVVKVHLQSQRPSVTSKLMPPSRLWSLSYTKLPSSLRP

Parental  TGKCLLYCNGVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAI
          TGKCLLYCNGVLEPL.LCPNGA.CATWFQDPTRFTGTMDAFVKI.RHEGTRTLWSGLPATLVMTVPATAI
Retrocopy TGKCLLYCNGVLEPLHLCPNGAHCATWFQDPTRFTGTMDAFVKIERHEGTRTLWSGLPATLVMTVPATAI

Parental  YFTAYDQLKAFLCGRALTSDFYAPMVAGAL-ARLGTVTVISPLELLRTKLQAQHV
          .FTAYDQLKAFLCGRALTSDFYAPMVAGAL..RLGTVTVISPLEL.RTKLQAQHV
Retrocopy SFTAYDQLKAFLCGRALTSDFYAPMVAGAL<GRLGTVTVISPLELVRTKLQAQHV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2296 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000008556	1 retrocopy	retro_dnov_1866,
Echinops telfairi	ENSETEG00000002713	1 retrocopy	retro_etel_823,
Homo sapiens	ENSG00000013306	1 retrocopy	retro_hsap_290,
Myotis lucifugus	ENSMLUG00000001925	2 retrocopies	retro_mluc_2296 , retro_mluc_646,
Monodelphis domestica	ENSMODG00000011561	1 retrocopy	retro_mdom_1102,
Pongo abelii	ENSPPYG00000008333	1 retrocopy	retro_pabe_383,
Pan troglodytes	ENSPTRG00000009272	1 retrocopy	retro_ptro_239,
Rattus norvegicus	ENSRNOG00000020994	2 retrocopies	retro_rnor_1892, retro_rnor_2884,
Ictidomys tridecemlineatus	ENSSTOG00000004189	1 retrocopy	retro_itri_447,